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glycoprotein

Euk-Vir

Drosophila_melanogaster_sigmavirus_AP30

glycoprotein__YP_003126912__Drosophila_melanogaster_sigmavirus_AP30__666363

Identity

Accession:: YP_003126912 ↗
Protein ID:: glycoprotein
Kingdom:: euk

Quality

70.9 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Sigmavirus› Drosophila_melanogaster_sigmavirus_AP30

TaxID: 666363

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 38-69_309-442

PDB

Domain cluster: rep: glycoprotein__YP_010086563__Kwatta_virus__1272945__D21-47_334-461

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF24833.2 best	Rhabdo_glycop_CD	61.0	1.70e-16	75.3%	79.3%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4d6wA01	2.30.30.640	Mainly Beta › Roll › SH3 type barrels. › Rhabdovirus spike glycoprotein G, lateral domain	0.82	44.0	6.02e-01	91.6%	96.7%
4d6wB02	6.10.140.740	Special › Helix non-globular › Helix Hairpins ›	0.75	38.0	5.17e-01	91.6%	90.2%
2ip6A00	1.20.1440.140	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) ›	0.52	27.0	3.71e-01	78.3%	97.7%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4803436	4300.1.1.15 ↗	beta complex topology › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like › Rhabdo_glycop_CD	0.82	38.0	5.52e-01	70.5%	93.8%
3922833	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.51	40.0	3.31e-01	80.7%	88.5%

D2 high residues 71-84_214-304

PDB

Domain cluster: rep: glycoprotein__YP_009305101__Wuhan_Louse_Fly_Virus_5__1608119__D70-87_212-294

D3 high residues 89-205

PDB

Domain cluster: rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00974.25 best	Rhabdo_glycop_FD	110.8	6.60e-32	85.5%	98.0%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4njcA00	3.10.20.730	Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like	0.61	27.0	3.57e-01	100.0%	76.7%
2q7nA05	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.61	27.0	3.00e-01	100.0%	50.0%
3w1eA03	2.40.10.410	Mainly Beta › Beta Barrel › Thrombin, subunit H › FlgT, C-terminal domain	0.56	31.0	3.44e-01	100.0%	68.5%
2jxtA01	3.10.20.10	Alpha Beta › Roll › Ubiquitin-like (UB roll) ›	0.52	25.0	3.00e-01	100.0%	67.1%
2ebfX01	3.10.670.10	Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei.	0.51	33.0	2.82e-01	100.0%	39.9%

ECOD (19)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1503409	220.3.1.1 ↗	beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Rhabdo_glycop	0.91	87.0	8.28e-01	100.0%	90.2%
2530507	220.3.1.3 ↗	beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Glycoprot_B_PH1	0.70	64.0	5.16e-01	100.0%	88.3%
185186	220.3.1.2 ↗	beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64	0.68	60.0	5.51e-01	100.0%	97.5%
2124201	220.3.1.2 ↗	beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64	0.68	61.0	5.52e-01	100.0%	98.1%
2124211	220.3.1.2 ↗	beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64	0.66	59.0	5.33e-01	100.0%	96.2%
2464208	220.3.1.2 ↗	beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64	0.65	58.0	5.28e-01	100.0%	95.6%
5065436	3115.1.1.0 ↗	a+b two layers › GP2-like › RplX-like › RplX-like	0.60	27.0	3.49e-01	100.0%	75.0%
4983090	3115.1.1.1 ↗	a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A	0.60	27.0	3.21e-01	100.0%	60.8%
4951473	3115.1.1.1 ↗	a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A	0.58	26.0	3.40e-01	100.0%	76.2%
5012895	3115.1.1.0 ↗	a+b two layers › GP2-like › RplX-like › RplX-like	0.57	27.0	3.66e-01	100.0%	92.7%
223776	3115.4.1.1 ↗	a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 › DUF1543	0.57	27.0	3.35e-01	100.0%	71.8%
3846579	11.1.1.41 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C	0.54	37.0	3.27e-01	70.1%	50.0%
3824339	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.54	28.0	2.56e-01	100.0%	34.5%
3517068	3115.1.1.6 ↗	a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494	0.53	28.0	3.56e-01	99.1%	89.2%
4128974	3115.1.1.1 ↗	a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A	0.52	27.0	3.19e-01	100.0%	71.2%
3227513	3115.1.1.3 ↗	a+b two layers › GP2-like › RplX-like › RplX-like › NRF	0.51	27.0	2.91e-01	94.9%	58.1%
3280008	3115.1.1.2 ↗	a+b two layers › GP2-like › RplX-like › RplX-like › DUF4288	0.51	35.0	3.95e-01	92.3%	93.3%
3394813	11.1.1.41 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C	0.51	34.0	3.01e-01	70.1%	48.5%
3797443	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.50	36.0	3.35e-01	94.0%	57.4%

D4 medium residues 474-507

PDB