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glycoprotein

Euk-Vir

Rift_Valley_fever_virus

glycoprotein__YP_003848705__Rift_Valley_fever_virus__11588

Identity

Accession:: YP_003848705 ↗
Protein ID:: glycoprotein
Kingdom:: euk

Quality

71.6 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Bunyaviricetes› Hareavirales› Phenuiviridae› Phlebovirus› Rift_Valley_fever_virus

TaxID: 11588

Cluster

View cluster (30 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 161-307

PDB

Domain cluster: rep: Glycoproteins_G1_and_G2_precursor__YP_089671__Sandfly_fever_Naples_virus__206160__D318-463

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF07243.17 best	Phlebovirus_G1	216.5	8.10e-64	100.0%	27.4%

D2 medium residues 507-528_1028-1137

PDB

Domain cluster: rep: glycoprotein_precursor__YP_009666331__Mukawa_virus__1569922__D875-994

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF19019.7 best	Phlebo_G2_C	184.2	2.30e-54	84.1%	64.3%

D3 medium residues 712-756_856-895_1011-1027

PDB

Domain cluster: rep: glycoprotein_precursor__YP_009505328__Badu_phasivirus__1980609__D739-805_894-940_1051-1072

CATH (17)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4hj1A01	2.60.98.50	Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 ›	0.96	89.0	7.27e-01	95.1%	84.3%
3bxoA02	2.20.130.10	Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains	0.69	37.0	4.67e-01	70.6%	89.8%
3otlA00	3.30.530.20	Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain	0.63	48.0	4.24e-01	81.4%	70.6%
3rd6A00	3.30.530.20	Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain	0.63	48.0	4.31e-01	81.4%	72.9%
4ggtB00	2.40.128.30	Mainly Beta › Beta Barrel › Lipocalin › Avidin-like	0.62	48.0	4.74e-01	80.4%	92.5%
3eliA00	3.30.530.20	Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain	0.59	46.0	4.15e-01	85.3%	72.2%
2pcsA00	3.30.530.20	Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain	0.57	41.0	3.67e-01	75.5%	77.0%
2c4iA01	2.40.128.30	Mainly Beta › Beta Barrel › Lipocalin › Avidin-like	0.57	43.0	4.13e-01	80.4%	86.4%
5ycqA00	2.30.30.390	Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain	0.56	34.0	3.83e-01	84.3%	79.2%
4akrA02	3.90.1150.210	Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit	0.56	45.0	3.99e-01	86.3%	78.9%
3dtdD00	2.60.40.1880	Mainly Beta › Sandwich › Immunoglobulin-like › Invasion associated locus B (IalB) protein	0.56	44.0	3.94e-01	85.3%	82.8%
6f1uK02	3.90.1150.210	Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit	0.55	44.0	3.95e-01	87.3%	78.6%
2gr7A00	3.30.1300.30	Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like	0.55	39.0	4.01e-01	81.4%	76.2%
1lkeA00	2.40.128.20	Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain	0.55	43.0	3.77e-01	85.3%	75.8%
4xmeA00	2.40.128.20	Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain	0.53	46.0	3.78e-01	95.1%	88.6%
1sr9A02	3.30.160.270	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Alpha-isopropylmalate synthase LeuA, regulatory domain	0.52	39.0	3.32e-01	84.3%	48.8%
7wa9A01	3.30.530.20	Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain	0.52	43.0	3.97e-01	96.1%	98.6%

ECOD (20)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1839942	5090.1.1.5 ↗	beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › Phlebovirus_G2	0.95	88.0	5.82e-01	95.1%	92.0%
5008207	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.77	57.0	6.42e-01	88.2%	98.8%
3425526	897.1.1.1 ↗	a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33	0.65	48.0	3.96e-01	77.5%	69.4%
3491456	3369.1.1.0 ↗	beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3	0.62	49.0	4.32e-01	84.3%	91.3%
3701388	11.8.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like	0.61	47.0	4.05e-01	82.4%	81.2%
3717759	331.1.1.0 ↗	a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like	0.59	41.0	3.91e-01	73.5%	79.2%
4955671	7089.1.1.0 ↗	a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD	0.58	41.0	4.57e-01	80.4%	95.0%
4464658	274.1.1.59 ↗	a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGG	0.57	40.0	3.91e-01	72.5%	73.7%
3297678	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.56	44.0	4.30e-01	92.2%	75.7%
4403206	4051.1.1.2 ↗	a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A	0.56	44.0	3.87e-01	84.3%	64.5%
3690464	9.1.1.0 ↗	beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins	0.56	46.0	3.74e-01	90.2%	84.1%
3685749	4051.1.1.2 ↗	a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A	0.55	43.0	3.84e-01	84.3%	72.7%
3534691	4051.1.1.2 ↗	a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A	0.55	43.0	3.72e-01	84.3%	67.3%
3972254	222.1.1.0 ↗	a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase	0.55	40.0	3.51e-01	75.5%	92.7%
4104949	9.1.1.0 ↗	beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins	0.55	42.0	4.16e-01	79.4%	87.6%
1692382	222.1.1.1 ↗	a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas	0.55	40.0	3.50e-01	76.5%	89.7%
3788774	4051.1.1.2 ↗	a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A	0.53	42.0	3.81e-01	86.3%	80.0%
4015241	5.1.4.51 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BNR_4	0.53	39.0	2.56e-01	77.5%	30.2%
4185890	274.1.1.1 ↗	a+b two layers › Pili subunits › Pili subunits › Pili subunits › Pilin	0.52	37.0	3.51e-01	76.5%	99.2%
3698019	11.8.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like	0.50	38.0	3.50e-01	83.3%	99.3%

D4 medium residues 757-768_896-1010

PDB

Domain cluster: rep: glycoprotein_precursor__YP_009305144__Yichang_Insect_virus__1608144__D660-672_720-821

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF07245.17 best	Phlebovirus_G2	30.1	3.50e-07	93.7%	30.6%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2pm9A02	2.20.25.400	Mainly Beta › Single Sheet › N-terminal domain of TfIIb ›	0.66	18.0	3.32e-01	74.0%	93.3%
4amcA01	2.30.30.20	Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain	0.51	18.0	2.79e-01	93.7%	80.4%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1839942	5090.1.1.5 ↗	beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › Phlebovirus_G2	0.96	93.0	6.51e-01	100.0%	75.4%
2531649	5090.1.1.5 ↗	beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › Phlebovirus_G2	0.88	84.0	5.93e-01	100.0%	76.6%
2772148	5090.1.1.5 ↗	beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › Phlebovirus_G2	0.78	73.0	5.25e-01	100.0%	76.0%
3769234	11.1.1.99 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set	0.51	24.0	3.18e-01	99.2%	84.6%

D5 medium residues 769-855

PDB

Domain cluster: rep: M_protein__YP_009512940__Punta_Toro_virus__11587__D880-962_1071-1085

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF07245.17 best	Phlebovirus_G2	68.4	8.00e-19	100.0%	26.0%