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glycoprotein

Euk-Vir

Persimmon_virus_A

glycoprotein__YP_006576505__Persimmon_virus_A__1211480

Identity

Accession:
YP_006576505 ↗
Protein ID:
glycoprotein
Kingdom:
euk

Quality

70.1 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Alphacytorhabdovirus› Persimmon_virus_A

TaxID: 1211480

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 31-57_306-433
PDB
Domain cluster: rep: glycoprotein__YP_010086793__Cabbage_cytorhabdovirus_1__2051550__D56-86_306-446
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5051614 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 29.0 3.19e-01 72.3% 68.0%
D2 high residues 83-204
PDB
Domain cluster: rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196
D3 medium residues 58-82_211-281
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5j3tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 53.0 4.86e-01 93.8% 77.0%
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.60 37.0 3.88e-01 81.2% 67.0%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.59 32.0 4.11e-01 91.7% 96.2%
1pwaA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.59 49.0 4.51e-01 90.6% 100.0%
3vsfA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.59 46.0 4.06e-01 83.3% 100.0%
1w1hD00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 47.0 4.18e-01 91.7% 60.6%
1upqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 50.0 4.88e-01 94.8% 90.7%
1wi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 47.0 4.55e-01 88.5% 84.7%
2kr0A01 2.30.29.70 Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 0.58 47.0 4.51e-01 88.5% 91.2%
1ia9A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 47.0 4.16e-01 89.6% 92.4%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 47.0 4.65e-01 88.5% 86.4%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 34.0 3.96e-01 89.6% 93.8%
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 35.0 3.73e-01 91.7% 77.9%
1jovA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.52 38.0 2.86e-01 80.2% 95.2%
3f6zB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.51 39.0 4.18e-01 88.5% 98.7%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.51 37.0 3.80e-01 79.2% 94.7%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995699 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 39.0 4.51e-01 89.6% 77.1%
5044373 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 38.0 4.63e-01 92.7% 88.3%
3586487 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 34.0 3.67e-01 87.5% 56.5%
3510681 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 49.0 5.45e-01 86.5% 100.0%
3940444 220.4.1.0 ↗ beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins 0.66 52.0 5.25e-01 91.7% 84.2%
3722745 220.1.1.86 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.65 50.0 5.35e-01 90.6% 97.5%
3269834 220.1.1.95 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › VID27_PH 0.63 52.0 4.83e-01 91.7% 77.6%
3247407 220.1.1.50 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_17 0.63 51.0 4.76e-01 90.6% 82.4%
3638300 220.1.1.95 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › VID27_PH 0.63 53.0 4.70e-01 93.8% 72.1%
3315951 220.1.1.86 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.62 47.0 5.13e-01 89.6% 100.0%
3732839 220.1.1.71 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Inp1 0.61 51.0 4.74e-01 91.7% 83.3%
3698484 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 53.0 4.53e-01 95.8% 85.8%
3991921 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 51.0 4.91e-01 93.8% 88.6%
3170740 220.1.1.83 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › VID27_N 0.61 51.0 4.15e-01 93.8% 73.2%
3750217 220.1.1.27 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD 0.61 51.0 4.22e-01 91.7% 65.9%
4011604 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.60 37.0 4.05e-01 90.6% 77.3%
3846584 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 50.0 4.14e-01 91.7% 64.0%
3631165 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 42.0 4.47e-01 90.6% 83.5%
3562058 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 50.0 4.61e-01 93.8% 76.8%
3923813 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 37.0 4.21e-01 83.3% 93.8%
3586955 220.1.1.88 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF956 0.57 47.0 4.66e-01 90.6% 85.0%
3778195 9.2.1.3 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › FBO_C 0.57 42.0 3.42e-01 78.1% 72.2%
3234621 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.56 47.0 4.28e-01 93.8% 68.1%
3529708 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.56 38.0 4.20e-01 95.8% 89.3%
3611989 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 48.0 4.17e-01 97.9% 91.3%
3914585 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 47.0 4.57e-01 94.8% 88.6%
5073791 3794.1.1.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.54 36.0 3.75e-01 82.3% 72.2%
2900291 71.1.1.11 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › PNGase_F-II_N 0.54 39.0 3.16e-01 88.5% 40.1%
3396896 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 33.0 3.59e-01 87.5% 76.0%
3171956 9.1.1.45 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › FBO_C 0.53 39.0 3.45e-01 79.2% 67.3%
3782325 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.52 34.0 3.99e-01 91.7% 100.0%
4669352 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.51 37.0 3.60e-01 77.1% 100.0%
3597372 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.51 36.0 2.66e-01 91.7% 25.6%
3385856 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.50 32.0 3.86e-01 87.5% 100.0%