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glycoprotein

Euk-Vir

Ikoma_lyssavirus

glycoprotein__YP_006742183__Ikoma_lyssavirus__1167696

Identity

Accession:: YP_006742183 ↗
Protein ID:: glycoprotein
Kingdom:: euk

Quality

75.3 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Lyssavirus› Ikoma_lyssavirus

TaxID: 1167696

Cluster

View cluster (70 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-49_283-413

PDB

Domain cluster: rep: glycoprotein__YP_010086563__Kwatta_virus__1272945__D21-47_334-461

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF24833.2 best	Rhabdo_glycop_CD	86.5	2.20e-24	73.1%	98.4%

D2 high residues 56-68_208-279

PDB

Domain cluster: rep: glycoprotein__YP_009305101__Wuhan_Louse_Fly_Virus_5__1608119__D70-87_212-294

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF24834.2 best	PH_Rhabdo_glycop	96.0	1.50e-27	69.4%	73.3%

D3 high residues 74-199

PDB

Domain cluster: rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00974.25 best	Rhabdo_glycop_FD	75.6	5.90e-21	82.5%	100.0%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3zoqC00	6.20.250.30	Special › Other non-globular › Double Stranded RNA Binding Domain ›	0.59	22.0	3.19e-01	100.0%	75.5%
1vwxS02	3.10.20.10	Alpha Beta › Roll › Ubiquitin-like (UB roll) ›	0.50	24.0	2.87e-01	100.0%	67.1%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4878945	220.3.1.1 ↗	beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Rhabdo_glycop	0.96	55.0	7.08e-01	88.1%	92.5%
4832828	220.3.1.5 ↗	beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Rhabdo_glycop_FD, PH_Rhabdo_glycop	0.92	51.0	6.69e-01	100.0%	93.4%
1503409	220.3.1.1 ↗	beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Rhabdo_glycop	0.89	80.0	7.92e-01	100.0%	90.2%
2530507	220.3.1.3 ↗	beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Glycoprot_B_PH1	0.64	58.0	4.78e-01	100.0%	88.3%
1688016	220.3.1.3 ↗	beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Glycoprot_B_PH1	0.63	57.0	4.84e-01	100.0%	92.8%
2464208	220.3.1.2 ↗	beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64	0.60	53.0	4.95e-01	100.0%	96.2%
2124211	220.3.1.2 ↗	beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64	0.59	53.0	4.91e-01	100.0%	96.2%
4990637	3115.1.1.1 ↗	a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A	0.56	25.0	3.01e-01	100.0%	59.0%
3508212	3115.1.1.6 ↗	a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494	0.55	28.0	3.65e-01	92.1%	88.6%
3280008	3115.1.1.2 ↗	a+b two layers › GP2-like › RplX-like › RplX-like › DUF4288	0.50	34.0	3.83e-01	92.1%	95.6%