glycoprotein

Euk-Vir

Drosophila_obscura_sigmavirus_10A

glycoprotein__YP_008686600__Drosophila_obscura_sigmavirus_10A__666962

Identity

72.5 mean pLDDT

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Sigmavirus› Drosophila_obscura_sigmavirus_10A

TaxID: 666962

View cluster (70 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 32-61_298-438

PDB

Domain cluster: rep: glycoprotein__YP_010086563__Kwatta_virus__1272945__D21-47_334-461

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF24833.2 best	Rhabdo_glycop_CD	48.3	1.50e-12	73.7%	76.9%

D2 high residues 84-201

PDB

Domain cluster: rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00974.25 best	Rhabdo_glycop_FD	61.8	1.20e-16	84.8%	98.0%

D3 high residues 211-295

PDB

Domain cluster: rep: glycoprotein__YP_009305101__Wuhan_Louse_Fly_Virus_5__1608119__D70-87_212-294

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4d6wA03	2.30.29.130	Mainly Beta › Roll › PH-domain like ›	0.77	67.0	6.45e-01	96.5%	84.2%
2cmzA03	2.30.29.130	Mainly Beta › Roll › PH-domain like ›	0.73	62.0	6.03e-01	96.5%	83.9%
3vxvA00	3.30.890.10	Alpha Beta › 2-Layer Sandwich › Methyl-cpg-binding Protein 2; Chain A › Methyl-cpg-binding Protein 2; Chain A	0.64	35.0	3.96e-01	97.6%	69.2%
4qxaB00	2.30.29.230	Mainly Beta › Roll › PH-domain like ›	0.61	50.0	4.25e-01	91.8%	89.1%
3hxlA02	2.60.40.4290	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.60	40.0	3.94e-01	85.9%	64.4%
3d89A00	2.102.10.10	Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain	0.52	36.0	3.11e-01	72.9%	64.0%
3afcA01	2.130.10.10	Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase	0.52	41.0	2.64e-01	89.4%	49.8%
4pz6A02	3.30.470.30	Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme	0.51	42.0	3.08e-01	90.6%	51.7%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3404941	220.1.1.15 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › BBL5	0.56	41.0	3.36e-01	78.8%	68.2%
3611112	220.1.1.0 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like	0.54	43.0	3.56e-01	88.2%	63.1%
3998716	11.1.5.97 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF7808	0.54	43.0	3.80e-01	85.9%	76.8%
3641570	3131.1.1.1 ↗	a+b two layers › FYR domain › FYR domain › FYR domain › FYRN,FYRC	0.53	40.0	3.38e-01	81.2%	56.0%
None	—		0.52	44.0	3.32e-01	94.1%	83.3%
3503621	214.1.1.1 ↗	a+b two layers › SH2 › SH2 › SH2 › SH2	0.52	39.0	3.83e-01	97.6%	74.4%
3276895	5.1.4.0 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed	0.51	39.0	2.50e-01	81.2%	41.3%
3684267	5.1.10.15 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › RPE65	0.51	33.0	2.84e-01	80.0%	42.3%