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glycoprotein

Euk-Vir

Loveridges_garter_snake_virus_1

glycoprotein__YP_009055062__Loveridges_garter_snake_virus_1__1881951

Identity

Accession:: YP_009055062 ↗
Protein ID:: glycoprotein
Kingdom:: euk

Quality

66.2 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Bornaviridae› Orthobornavirus› Loveridge's_garter_snake_virus_1

TaxID: 1881951

Cluster

View cluster (13 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 67-180

PDB

Domain cluster: rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06208.18 best	BDV_G	182.3	1.80e-53	100.0%	24.0%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3zoqC00	6.20.250.30	Special › Other non-globular › Double Stranded RNA Binding Domain ›	0.59	27.0	3.76e-01	100.0%	92.5%
2qsdA01	3.10.20.10	Alpha Beta › Roll › Ubiquitin-like (UB roll) ›	0.57	29.0	3.68e-01	100.0%	83.6%
3n40P04	2.60.40.2400	Mainly Beta › Sandwich › Immunoglobulin-like › Alphavirus E2 glycoprotein, domain C	0.56	24.0	2.93e-01	100.0%	60.3%
4dohB02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.53	25.0	2.80e-01	100.0%	54.5%
5cvmA00	3.90.70.10	Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases	0.51	28.0	2.08e-01	100.0%	19.2%
3l9rA01	3.30.500.10	Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like	0.51	38.0	3.28e-01	78.1%	99.4%
5jtwA04	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.50	29.0	3.09e-01	95.6%	63.7%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1503409	220.3.1.1 ↗	beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Rhabdo_glycop	0.73	67.0	6.41e-01	100.0%	91.7%
3583831	382.1.1.0 ↗	few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like	0.69	36.0	3.49e-01	100.0%	45.6%
5033281	304.100.1.1 ↗	a+b two layers › Alpha-beta plaits › PurS-like › PurS-like › PurS	0.56	32.0	4.13e-01	100.0%	98.5%
3237858	382.1.1.0 ↗	few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like	0.54	39.0	3.87e-01	74.6%	96.7%
3606414	11.2.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain	0.54	47.0	3.95e-01	98.2%	99.5%
3892842	3115.1.1.0 ↗	a+b two layers › GP2-like › RplX-like › RplX-like	0.54	28.0	3.54e-01	100.0%	87.7%
2512518	3115.1.1.0 ↗	a+b two layers › GP2-like › RplX-like › RplX-like	0.53	28.0	3.02e-01	100.0%	57.4%
3923361	11.1.1.41 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C	0.51	38.0	3.32e-01	78.1%	52.0%
3742696	11.1.1.41 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C	0.51	38.0	3.27e-01	76.3%	53.7%
4636309	5084.1.1.0 ↗	beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like	0.51	44.0	3.68e-01	98.2%	98.1%

D2 medium residues 48-66_186-240

PDB

Domain cluster: rep: glycoprotein__YP_009268897__Parrot_bornavirus_4__1548718__D54-64_188-232

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06208.18 best	BDV_G	65.6	4.50e-18	75.7%	11.2%