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glycoprotein
Euk-VirVesiculovirus_malpais
glycoprotein__YP_009094177__Vesiculovirus_malpais__1972570
Identity
- Accession:
- YP_009094177 ↗
- Protein ID:
- glycoprotein
- Kingdom:
- euk
Quality
74.8
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Rhabdoviridae›
Vesiculovirus›
Vesiculovirus_malpais
TaxID: 1972570
Cluster
View cluster (70 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 56-68_196-271
Domain cluster:
rep: glycoprotein__YP_009305101__Wuhan_Louse_Fly_Virus_5__1608119__D70-87_212-294
D2
high
residues 72-188
Domain cluster:
rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00974.25 best | Rhabdo_glycop_FD | 117.8 | 4.10e-34 | 85.5% | 100.0% |
D3
medium
residues 21-49_294-354
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24833.2 best | Rhabdo_glycop_CD | 74.9 | 8.30e-21 | 82.2% | 52.1% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4d6wA01 | 2.30.30.640 | Mainly Beta › Roll › SH3 type barrels. › Rhabdovirus spike glycoprotein G, lateral domain | 0.98 | 42.0 | 4.19e-01 | 100.0% | 42.4% |
| 2zxqA01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.52 | 43.0 | 3.08e-01 | 93.3% | 37.8% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3263948 | 812.1.1.0 ↗ | a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain | 0.53 | 28.0 | 3.53e-01 | 83.3% | 100.0% |
| 4247992 | 304.14.1.1 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR | 0.50 | 30.0 | 3.14e-01 | 98.9% | 63.5% |
D4
medium
residues 355-430
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ogqA01 | 3.30.1120.30 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain | 0.56 | 47.0 | 4.02e-01 | 94.7% | 78.6% |
| 3zg9B02 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.50 | 36.0 | 2.43e-01 | 77.6% | 96.1% |