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glycoprotein

Euk-Vir

Grass_carp_virus

glycoprotein__YP_009094266__Grass_carp_virus__1288359

Identity

Accession:
YP_009094266 ↗
Protein ID:
glycoprotein
Kingdom:
euk

Quality

74.9 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Sprivivirus› grass_carp_rhabdovirus

TaxID: 1288359

Cluster

View cluster (70 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-50_284-418
PDB
Domain cluster: rep: glycoprotein__YP_010086563__Kwatta_virus__1272945__D21-47_334-461
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24833.2 best Rhabdo_glycop_CD 76.6 2.50e-21 73.3% 87.6%
D2 high residues 55-67_197-265
PDB
Domain cluster: rep: glycoprotein__YP_009305101__Wuhan_Louse_Fly_Virus_5__1608119__D70-87_212-294
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4d6wA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.78 71.0 6.76e-01 100.0% 88.4%
2cmzA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.75 69.0 6.59e-01 100.0% 90.3%
2da0A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 59.0 5.26e-01 100.0% 77.2%
4nswA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 58.0 5.29e-01 100.0% 80.7%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.64 56.0 4.73e-01 97.6% 76.5%
3nqzA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 38.0 3.81e-01 97.6% 58.3%
3voqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 56.0 5.03e-01 100.0% 80.2%
2codA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 56.0 5.34e-01 100.0% 88.5%
2elbA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 56.0 5.26e-01 100.0% 81.4%
1qftB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 43.0 3.44e-01 73.2% 63.9%
3e4wA02 2.40.180.10 Mainly Beta › Beta Barrel › Catalase HpII, Chain A, domain 1 › Catalase core domain 0.61 51.0 3.84e-01 92.7% 85.5%
2kcjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 54.0 4.97e-01 100.0% 85.2%
4qxaB00 2.30.29.230 Mainly Beta › Roll › PH-domain like › 0.60 52.0 4.40e-01 100.0% 85.7%
4hdoA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 52.0 5.11e-01 100.0% 91.3%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 52.0 4.44e-01 100.0% 88.6%
1tj6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 52.0 4.69e-01 100.0% 93.0%
3f6zB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.56 41.0 4.16e-01 90.2% 81.0%
4kujA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 50.0 4.08e-01 98.8% 96.0%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.56 41.0 4.46e-01 92.7% 95.6%
1vf7F01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.56 39.0 3.61e-01 92.7% 57.8%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 48.0 4.16e-01 100.0% 73.9%
3wjcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 46.0 3.81e-01 93.9% 86.9%
1uzxA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.55 42.0 3.49e-01 81.7% 50.7%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.53 39.0 3.07e-01 78.0% 86.7%
7sxqA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 41.0 2.99e-01 90.2% 33.9%
2v1rA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 37.0 4.00e-01 92.7% 94.0%
4hudA01 3.30.2000.40 Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser 0.50 36.0 2.71e-01 74.4% 57.1%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3902169 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 62.0 5.39e-01 100.0% 81.6%
3535752 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 61.0 5.09e-01 100.0% 72.9%
3237220 220.1.1.84 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_15 0.67 60.0 5.40e-01 100.0% 89.6%
3997533 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 60.0 5.36e-01 100.0% 86.1%
3999510 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 60.0 5.04e-01 100.0% 88.6%
3914585 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.67 60.0 5.52e-01 100.0% 90.5%
4995758 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.66 58.0 5.79e-01 98.8% 91.8%
3680657 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.66 59.0 3.77e-01 100.0% 24.9%
3717236 220.1.1.175 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_31 0.66 60.0 4.95e-01 100.0% 75.2%
4069753 295.1.1.2 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › SsgA 0.66 58.0 4.93e-01 97.6% 76.3%
3563663 220.1.1.33 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_8 0.66 59.0 5.50e-01 98.8% 91.0%
3610057 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 59.0 4.92e-01 100.0% 86.4%
3792948 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 58.0 5.27e-01 100.0% 91.8%
3707434 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 58.0 4.20e-01 100.0% 53.0%
3994778 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 57.0 4.85e-01 100.0% 71.9%
3389863 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 56.0 4.97e-01 100.0% 91.2%
3171429 220.1.1.169 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_26 0.64 56.0 4.53e-01 100.0% 87.9%
3897030 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 56.0 5.07e-01 100.0% 93.0%
3572708 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 58.0 5.15e-01 100.0% 74.8%
3555634 220.1.1.43 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SIN1_PH 0.64 57.0 4.73e-01 100.0% 68.3%
3570843 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 57.0 5.20e-01 100.0% 78.2%
3874175 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 56.0 4.86e-01 100.0% 73.6%
3559960 2006.1.6.66 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF4537 0.62 41.0 4.40e-01 92.7% 80.0%
3250163 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 54.0 5.20e-01 100.0% 85.3%
3855974 4.1.1.253 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4537 0.62 41.0 4.29e-01 92.7% 74.7%
3390227 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 53.0 4.95e-01 100.0% 95.2%
3648024 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.60 53.0 4.65e-01 100.0% 79.2%
2417924 1021.1.1.0 ↗ a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.59 33.0 3.27e-01 75.6% 50.6%
3703972 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 50.0 4.49e-01 100.0% 92.0%
3388895 220.1.1.170 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_alsin 0.58 50.0 4.61e-01 100.0% 77.3%
3265885 3794.1.1.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.55 43.0 3.74e-01 90.2% 67.9%
4028190 9.15.1.1 ↗ beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 › TLD 0.54 44.0 3.54e-01 92.7% 66.3%
4033493 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.54 35.0 3.93e-01 98.8% 96.4%
4126797 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.53 36.0 4.02e-01 100.0% 95.0%
3475228 9.15.1.1 ↗ beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 › TLD 0.53 44.0 3.51e-01 93.9% 62.9%
3831275 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.53 44.0 2.97e-01 93.9% 99.4%
3989261 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.53 35.0 3.93e-01 97.6% 100.0%
3990000 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.53 35.0 3.92e-01 100.0% 100.0%
3594916 4252.1.1.1 ↗ beta barrels › AttH-like › AttH-like › AttH-like › CrtC 0.53 43.0 3.67e-01 91.5% 93.6%
3733891 5.1.4.276 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_WDR75_2nd 0.51 36.0 2.29e-01 73.2% 43.0%
3818311 216.1.1.3 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.51 39.0 3.26e-01 86.6% 55.0%
4017453 243.1.1.41 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Coa1 0.51 40.0 3.60e-01 86.6% 81.7%
4086880 9.1.1.14 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS 0.50 41.0 3.46e-01 92.7% 94.0%
D3 high residues 76-188
PDB
Domain cluster: rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00974.25 best Rhabdo_glycop_FD 100.7 9.00e-29 85.0% 95.9%