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glycoprotein

Euk-Vir

Scophthalmus_maximus_rhabdovirus

glycoprotein__YP_009094345__Scophthalmus_maximus_rhabdovirus__936149

Identity

Accession:: YP_009094345 ↗
Protein ID:: glycoprotein
Kingdom:: euk

Quality

72.8 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Scophrhavirus› Scophthalmus_maximus_rhabdovirus

TaxID: 936149

Cluster

View cluster (70 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-48_300-396

PDB

Domain cluster: rep: glycoprotein__YP_010086563__Kwatta_virus__1272945__D21-47_334-461

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF24833.2 best	Rhabdo_glycop_CD	73.2	2.80e-20	70.6%	71.9%

D2 high residues 68-183

PDB

Domain cluster: rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00974.25 best	Rhabdo_glycop_FD	116.8	8.40e-34	86.2%	99.0%

D3 medium residues 52-65_200-299

PDB

Domain cluster: representative

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4d6wA03	2.30.29.130	Mainly Beta › Roll › PH-domain like ›	0.82	61.0	6.63e-01	76.3%	100.0%
2cmzA03	2.30.29.130	Mainly Beta › Roll › PH-domain like ›	0.77	56.0	6.21e-01	75.4%	98.9%
1q67A01	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.63	43.0	4.04e-01	70.2%	99.3%
1v61A00	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.62	43.0	4.10e-01	70.2%	95.5%
1faoA00	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.61	42.0	4.44e-01	70.2%	98.0%
3tfmA01	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.61	42.0	4.42e-01	70.2%	100.0%
2d9xA01	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.60	41.0	4.21e-01	70.2%	88.2%
2lydA00	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.57	39.0	3.78e-01	70.2%	88.8%
3fm2A00	3.40.1570.10	Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains	0.54	37.0	3.58e-01	71.1%	88.7%
5vmzA01	3.30.160.60	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger	0.53	22.0	3.02e-01	76.3%	94.9%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3882796	1021.1.1.2 ↗	a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › RNA_hel_CTD	0.70	25.0	2.88e-01	96.5%	43.5%
2417924	1021.1.1.0 ↗	a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases	0.65	27.0	3.14e-01	93.0%	51.8%
939	220.1.1.1 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › PH	0.62	43.0	4.10e-01	70.2%	95.5%
3515993	220.1.1.13 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1	0.61	42.0	4.15e-01	70.2%	95.0%
4024501	220.1.1.0 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like	0.60	41.0	4.31e-01	71.1%	99.0%
3296731	386.1.1.4 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED	0.60	25.0	3.64e-01	78.9%	93.3%
3790351	220.1.1.13 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1	0.59	40.0	4.02e-01	70.2%	98.3%
3388895	220.1.1.170 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_alsin	0.59	40.0	4.13e-01	70.2%	94.5%
3478666	220.1.1.1 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › PH	0.57	39.0	4.08e-01	70.2%	88.6%
3331838	386.1.1.4 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED	0.52	24.0	3.23e-01	80.7%	94.0%
3549481	247.1.1.38 ↗	a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C	0.51	28.0	3.31e-01	86.8%	76.2%
3747736	331.23.1.7 ↗	a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF73-100_C	0.50	28.0	3.27e-01	86.8%	76.2%