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glycoprotein

Euk-Vir

Eggplant_mottled_dwarf_nucleorhabdovirus

glycoprotein__YP_009094357__Eggplant_mottled_dwarf_nucleorhabdovirus__488317

Identity

Accession:
YP_009094357 ↗
Protein ID:
glycoprotein
Kingdom:
euk

Quality

64.4 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Alphanucleorhabdovirus› Eggplant_mottled_dwarf_virus

TaxID: 488317

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 127-260
PDB
Domain cluster: rep: glycoprotein__YP_010086816__Wheat_yellow_striate_virus__2152660__D148-272
D2 medium residues 114-124_267-326
PDB
Domain cluster: rep: glycoprotein__YP_009506260__Cacao_swollen_shoot_Togo_A_virus__1960254__D37-59_197-249
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gumB03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.79 70.0 5.88e-01 100.0% 90.1%
3fvcA03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.78 69.0 5.98e-01 100.0% 94.5%
1z87A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.71 62.0 5.56e-01 98.6% 85.0%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.69 59.0 4.98e-01 98.6% 66.1%
5u78C00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 59.0 5.06e-01 98.6% 88.8%
1v5pA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 56.0 5.06e-01 100.0% 92.2%
4dixA02 2.30.29.140 Mainly Beta › Roll › PH-domain like › 0.65 55.0 4.69e-01 98.6% 67.2%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 55.0 4.96e-01 97.2% 85.0%
2dtcA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 54.0 4.64e-01 98.6% 85.3%
2vseA05 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.62 52.0 4.23e-01 95.8% 96.5%
1w4tA02 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.61 52.0 4.73e-01 98.6% 99.0%
2aq6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 44.0 3.52e-01 77.5% 88.8%
1jlxA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.58 47.0 3.92e-01 95.8% 99.3%
2jn4A00 2.40.50.240 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NifT/FixU-like 0.58 40.0 4.13e-01 73.2% 92.4%
1njhA00 2.70.180.10 Mainly Beta › Distorted Sandwich › Protein Yojf; Chain: A; › Hypothetical protein YojF 0.57 45.0 4.06e-01 91.5% 84.3%
1upsA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 47.0 3.98e-01 97.2% 100.0%
3nziA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 41.0 3.67e-01 100.0% 52.8%
2vldB01 2.70.180.20 Mainly Beta › Distorted Sandwich › Protein Yojf; Chain: A; › 0.56 47.0 4.11e-01 100.0% 71.2%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.56 41.0 3.97e-01 93.0% 68.7%
4kc7A02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.55 47.0 4.32e-01 100.0% 94.9%
4kcaA03 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.54 47.0 4.30e-01 98.6% 94.8%
4mb7A01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.54 41.0 3.55e-01 87.3% 77.0%
3twlA01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.53 40.0 3.47e-01 87.3% 83.5%
1y9lA00 2.40.128.230 Mainly Beta › Beta Barrel › Lipocalin › Pilot protein MxiM 0.53 45.0 3.97e-01 100.0% 99.1%
2la7A01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.53 44.0 3.76e-01 100.0% 94.5%
3pe0A03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 39.0 4.06e-01 98.6% 90.6%
1g8jB00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.52 45.0 3.69e-01 95.8% 82.0%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 39.0 4.03e-01 97.2% 86.8%
7mhwA01 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.51 43.0 4.09e-01 98.6% 95.5%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3925159 220.4.1.0 ↗ beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins 0.69 60.0 5.83e-01 98.6% 95.0%
3508683 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 59.0 4.93e-01 98.6% 84.6%
3530263 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.69 59.0 4.90e-01 98.6% 77.7%
3940444 220.4.1.0 ↗ beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins 0.68 58.0 5.33e-01 95.8% 77.9%
3212337 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.68 60.0 5.34e-01 98.6% 81.0%
5081361 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 59.0 5.28e-01 100.0% 73.0%
3173787 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 57.0 4.88e-01 100.0% 80.8%
3788745 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 56.0 4.53e-01 98.6% 64.8%
3597004 220.1.1.26 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Vps36_ESCRT-II 0.65 56.0 4.60e-01 98.6% 65.9%
3265019 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 56.0 5.01e-01 98.6% 78.6%
3603405 4043.1.1.2 ↗ a+b complex topology › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_7 0.64 42.0 3.40e-01 95.8% 34.8%
3471347 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 55.0 4.77e-01 100.0% 83.5%
3713703 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 52.0 4.55e-01 98.6% 76.5%
3594856 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 52.0 4.64e-01 100.0% 77.3%
3273105 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.61 51.0 4.54e-01 94.4% 97.1%
3259514 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 51.0 4.42e-01 100.0% 74.2%
3585032 9.1.1.50 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7042 0.58 49.0 4.12e-01 98.6% 91.5%
4995535 219.1.1.76 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 0.56 48.0 3.55e-01 100.0% 36.8%
4001570 330.3.1.0 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.54 33.0 3.30e-01 88.7% 56.0%
3998283 3534.1.1.3 ↗ beta barrels › Pfam PF06938 (DUF1285) › Pfam PF06938 (DUF1285) › Pfam PF06938 (DUF1285) › DUF4505 0.53 38.0 3.65e-01 77.5% 67.1%
3477189 375.14.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) 0.52 33.0 3.74e-01 98.6% 100.0%
4056467 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 39.0 4.15e-01 98.6% 96.7%
4439164 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 39.0 2.71e-01 100.0% 23.1%
D3 medium residues 327-408
PDB