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glycoprotein

Euk-Vir

Vesiculovirus_perinet

glycoprotein__YP_009094387__Vesiculovirus_perinet__1972569

Identity

Accession:
YP_009094387 ↗
Protein ID:
glycoprotein
Kingdom:
euk

Quality

74.5 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Vesiculovirus› Vesiculovirus_perinet

TaxID: 1972569

Cluster

View cluster (70 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 26-49_291-424
PDB
Domain cluster: rep: glycoprotein__YP_010086563__Kwatta_virus__1272945__D21-47_334-461
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24833.2 best Rhabdo_glycop_CD 109.2 2.00e-31 74.1% 90.1%
D2 high residues 56-69_199-271
PDB
Domain cluster: rep: glycoprotein__YP_009305101__Wuhan_Louse_Fly_Virus_5__1608119__D70-87_212-294
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4d6wA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.94 87.0 8.46e-01 100.0% 89.5%
2cmzA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.78 71.0 6.95e-01 100.0% 91.4%
4odbA00 2.60.90.20 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Virus attachment protein , globular domain 0.69 45.0 3.60e-01 94.3% 35.8%
3cxbB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 57.0 5.38e-01 97.7% 91.3%
1qwdB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 44.0 3.56e-01 70.1% 64.5%
1eazA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 57.0 5.45e-01 100.0% 90.3%
2kigA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.64 56.0 4.63e-01 100.0% 69.6%
2d9vA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 56.0 5.27e-01 100.0% 93.5%
2d9xA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 56.0 5.23e-01 100.0% 82.7%
2dn6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 56.0 5.13e-01 100.0% 79.1%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 55.0 5.14e-01 98.9% 96.4%
2kcjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 57.0 5.27e-01 100.0% 86.1%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 55.0 5.23e-01 96.6% 88.0%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 55.0 4.94e-01 100.0% 76.9%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 55.0 5.00e-01 100.0% 87.2%
2z13A00 2.30.29.170 Mainly Beta › Roll › PH-domain like › 0.61 55.0 4.97e-01 98.9% 90.6%
1ntyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 55.0 4.89e-01 100.0% 80.6%
1faoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 55.0 5.25e-01 100.0% 91.0%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 54.0 5.02e-01 100.0% 78.0%
4a6fA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 52.0 4.96e-01 100.0% 94.3%
3lkmA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 51.0 4.21e-01 97.7% 95.5%
3icsA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 49.0 3.57e-01 95.4% 36.8%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 48.0 3.88e-01 93.1% 96.0%
2y7bA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 49.0 4.31e-01 100.0% 91.0%
4fx9A03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.56 48.0 4.43e-01 95.4% 81.4%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.56 32.0 3.44e-01 97.7% 63.6%
1nhpA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.56 48.0 4.48e-01 96.6% 83.2%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 49.0 4.23e-01 100.0% 94.3%
3c19A02 3.10.20.300 Alpha Beta › Roll › Ubiquitin-like (UB roll) › mk0293 like domain 0.55 39.0 4.12e-01 98.9% 83.3%
3p54A02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.55 35.0 3.82e-01 96.6% 80.3%
3bk5A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.54 46.0 3.41e-01 94.3% 84.7%
2g2sA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.54 34.0 3.83e-01 97.7% 85.9%
3wjcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 45.0 3.78e-01 93.1% 91.5%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.54 33.0 3.46e-01 93.1% 67.1%
3vwcA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 41.0 3.58e-01 86.2% 97.9%
4czwA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 45.0 2.98e-01 95.4% 88.3%
6r3wA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 44.0 3.65e-01 93.1% 91.9%
8einA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.52 41.0 2.96e-01 88.5% 69.4%
1lnsA02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 46.0 3.12e-01 100.0% 45.8%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 36.0 3.85e-01 88.5% 87.5%
3b5mA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 41.0 3.77e-01 88.5% 97.5%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 34.0 3.57e-01 90.8% 78.9%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3902169 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 60.0 5.32e-01 100.0% 82.4%
3609894 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.65 53.0 4.25e-01 100.0% 44.5%
3771406 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 57.0 5.10e-01 100.0% 89.6%
4019707 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 57.0 4.56e-01 98.9% 55.9%
3555102 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 56.0 5.07e-01 100.0% 95.0%
160843 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 56.0 4.95e-01 100.0% 85.0%
3765075 220.1.1.164 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26089 0.63 56.0 4.43e-01 100.0% 69.4%
3522681 220.1.1.164 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26089 0.62 55.0 4.68e-01 100.0% 86.2%
3633728 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 55.0 5.05e-01 100.0% 82.6%
4021140 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 55.0 5.02e-01 100.0% 86.1%
3591998 220.1.1.11 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.58 49.0 4.61e-01 98.9% 94.5%
7380 219.1.1.34 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C47 0.57 48.0 3.88e-01 93.1% 96.0%
4954690 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 50.0 3.82e-01 100.0% 66.4%
3481413 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.57 50.0 3.68e-01 100.0% 50.4%
3933337 109.4.1.2535 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Alpha_kinase 0.56 49.0 3.12e-01 100.0% 25.3%
3702987 220.1.1.11 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.56 48.0 3.59e-01 100.0% 41.2%
4021847 2011.1.1.8 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.56 38.0 2.66e-01 70.1% 81.0%
3847699 206.1.1.13 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Alpha_kinase 0.56 49.0 3.46e-01 100.0% 41.4%
3613178 220.1.1.11 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.56 48.0 4.25e-01 100.0% 75.6%
3172880 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 47.0 3.64e-01 100.0% 50.7%
3831275 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.54 46.0 3.09e-01 92.0% 100.0%
3351981 3792.1.1.2 ↗ beta sandwiches › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › APC1_3rd 0.54 39.0 3.71e-01 75.9% 85.7%
3961371 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.54 36.0 3.71e-01 90.8% 73.8%
3810292 3792.1.1.2 ↗ beta sandwiches › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › APC1_3rd 0.53 38.0 4.05e-01 74.7% 98.7%
3791476 206.1.1.13 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Alpha_kinase 0.53 46.0 3.37e-01 100.0% 46.5%
5053437 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.52 45.0 3.37e-01 93.1% 38.6%
4086880 9.1.1.14 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS 0.52 42.0 3.58e-01 88.5% 92.6%
3587863 3158.1.1.1 ↗ beta barrels › uncharacterized protein RUMGNA_01417 › uncharacterized protein RUMGNA_01417 › uncharacterized protein RUMGNA_01417 › DUF5348 0.52 34.0 3.52e-01 90.8% 69.4%
5024617 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.52 37.0 3.67e-01 93.1% 70.5%
4147907 9.1.1.14 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS 0.52 42.0 3.65e-01 89.7% 93.6%
4965160 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.52 43.0 4.20e-01 94.3% 94.7%
5025498 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.51 37.0 3.69e-01 93.1% 74.4%
4930696 212.1.1.0 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.51 42.0 3.63e-01 95.4% 92.7%
3598250 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.51 44.0 3.23e-01 100.0% 44.3%
3022251 2011.1.1.18 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › AstE_AspA_cat 0.50 38.0 2.64e-01 79.3% 74.7%
3819081 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.50 45.0 3.08e-01 100.0% 32.5%
D3 high residues 74-189
PDB
Domain cluster: rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00974.25 best Rhabdo_glycop_FD 123.7 5.90e-36 86.2% 99.0%