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glycoprotein

Euk-Vir

Sunguru_virus

glycoprotein__YP_009094440__Sunguru_virus__1491491

Identity

Accession:
YP_009094440 ↗
Protein ID:
glycoprotein
Kingdom:
euk

Quality

70.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-48_340-474
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24833.2 best Rhabdo_glycop_CD 42.5 9.10e-11 77.6% 79.3%
D2 medium residues 54-71_178-255_305-339
PDB
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4d6wA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.79 56.0 6.43e-01 90.8% 100.0%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 44.0 4.98e-01 82.4% 95.0%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 43.0 4.60e-01 85.5% 84.4%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 45.0 5.00e-01 87.0% 97.1%
3a58A01 2.30.29.90 Mainly Beta › Roll › PH-domain like › 0.60 49.0 4.49e-01 87.0% 70.7%
3hrgA01 3.30.420.250 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, N-terminal domain 0.58 32.0 3.19e-01 80.9% 49.7%
4a18P00 3.30.720.90 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.58 30.0 3.96e-01 79.4% 97.0%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.57 43.0 4.69e-01 84.0% 98.1%
2k5fA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.57 28.0 3.38e-01 84.7% 69.9%
3f5rA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 43.0 4.60e-01 87.0% 92.9%
4wj7D00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 43.0 4.44e-01 84.7% 100.0%
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 41.0 4.20e-01 84.7% 88.5%
1b33N01 3.30.1490.170 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Allophycocyanin linker chain (domain) 0.52 24.0 3.37e-01 78.6% 100.0%
7r8iA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 33.0 2.86e-01 93.1% 39.6%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3887129 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 46.0 5.42e-01 86.3% 98.9%
3529648 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.65 44.0 4.33e-01 84.7% 65.0%
4945655 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 42.0 4.74e-01 86.3% 89.0%
3782222 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 44.0 4.19e-01 85.5% 60.6%
3707723 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 47.0 5.23e-01 87.8% 98.1%
3219484 220.1.1.44 beta barrels › PH domain-like › PH domain-like › PH domain-like › POB3_N 0.62 45.0 5.08e-01 86.3% 98.0%
3743890 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 43.0 4.18e-01 85.5% 65.5%
3841924 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 42.0 4.60e-01 84.0% 86.4%
3691812 220.1.1.32 beta barrels › PH domain-like › PH domain-like › PH domain-like › Sec3-PIP2_bind 0.60 49.0 4.39e-01 87.0% 75.6%
3929135 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 43.0 4.77e-01 85.5% 95.2%
3243417 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 46.0 4.70e-01 84.7% 88.5%
3536412 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 46.0 4.52e-01 87.8% 77.9%
3890418 220.1.1.38 beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.58 44.0 4.80e-01 84.7% 99.0%
4927002 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.57 36.0 4.35e-01 87.8% 97.6%
3624043 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 45.0 4.03e-01 85.5% 58.4%
5053759 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 45.0 4.56e-01 84.7% 90.0%
3929075 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 48.0 4.68e-01 93.1% 82.8%
3646441 2484.1.1.205 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27035 0.56 31.0 3.33e-01 88.5% 60.0%
3992398 220.1.1.44 beta barrels › PH domain-like › PH domain-like › PH domain-like › POB3_N 0.56 45.0 4.73e-01 86.3% 98.3%
4208333 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 42.0 4.43e-01 88.5% 87.5%
3315491 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 44.0 4.37e-01 84.7% 90.7%
3697981 220.1.1.36 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.56 44.0 3.82e-01 84.7% 59.0%
3567195 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 44.0 4.04e-01 85.5% 64.0%
3783790 220.1.1.69 beta barrels › PH domain-like › PH domain-like › PH domain-like › Meiotic_rec114 0.55 44.0 4.64e-01 86.3% 98.3%
3700838 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.55 43.0 4.32e-01 85.5% 83.1%
3398585 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 44.0 4.44e-01 84.7% 95.4%
3336357 3794.1.1.4 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › MCCA_BT 0.54 37.0 3.48e-01 70.2% 60.0%
4963351 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 37.0 3.84e-01 85.5% 81.7%
3850995 11.1.1.274 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ObR_Ig 0.51 30.0 3.17e-01 94.7% 62.5%
4118739 2484.1.1.40 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.51 31.0 3.08e-01 87.0% 54.5%
D3 medium residues 75-143
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00974.25 best Rhabdo_glycop_FD 45.4 1.60e-11 100.0% 75.5%
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7uwjC01 2.60.40.2160 Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 1 0.58 45.0 3.66e-01 87.0% 46.3%
5jtwA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 43.0 3.73e-01 92.8% 52.9%
6rptC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 44.0 3.73e-01 88.4% 50.9%
1nc7A00 2.60.290.11 Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like 0.56 41.0 3.43e-01 82.6% 45.7%
2n59A00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 44.0 3.82e-01 87.0% 56.4%
2zewB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 45.0 3.56e-01 95.7% 41.5%
2xomA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 42.0 3.37e-01 94.2% 38.6%
3waiA02 2.60.40.3390 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 44.0 3.95e-01 91.3% 62.4%
2jvuA00 2.60.40.2290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 45.0 4.00e-01 91.3% 61.2%
1ayrB02 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 47.0 3.50e-01 95.7% 57.1%
4ll1C02 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 48.0 3.77e-01 95.7% 48.6%
2xskA00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 43.0 3.86e-01 89.9% 62.1%
4h3wA02 2.60.120.1260 Mainly Beta › Sandwich › Jelly Rolls › 0.54 45.0 3.40e-01 88.4% 42.1%
1hq6B00 3.50.20.10 Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Pyruvoyl-Dependent Histidine Decarboxylase, subunit B 0.54 43.0 3.02e-01 88.4% 78.5%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.54 44.0 3.88e-01 87.0% 65.6%
5z6pA01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.53 43.0 3.09e-01 85.5% 49.4%
2ichA01 2.40.370.10 Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain 0.53 44.0 3.35e-01 94.2% 94.4%
3mfiA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.53 42.0 3.48e-01 85.5% 58.8%
3fn9A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 42.0 3.56e-01 95.7% 51.7%
2w5fB01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 42.0 3.33e-01 95.7% 41.4%
3zoqC00 6.20.250.30 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.51 36.0 4.05e-01 87.0% 98.1%
2bvfA03 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.51 39.0 2.83e-01 85.5% 56.2%
3jamD02 3.30.1140.32 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain 0.51 42.0 3.51e-01 97.1% 58.6%
3i3tA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 43.0 2.79e-01 92.8% 24.4%
4geiA00 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 45.0 3.53e-01 98.6% 88.2%
6cc0A01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.50 43.0 3.25e-01 94.2% 61.6%
7ui8A01 2.60.40.3930 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 41.0 3.56e-01 87.0% 59.8%
1l9nA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 43.0 3.66e-01 95.7% 61.4%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3737793 11.1.1.41 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.64 57.0 4.13e-01 97.1% 59.4%
3817425 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.62 53.0 3.74e-01 91.3% 38.5%
5043357 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 46.0 3.98e-01 92.8% 51.4%
3548875 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 46.0 2.61e-01 87.0% 8.2%
4983111 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 48.0 4.64e-01 92.8% 78.7%
3802129 10.32.1.192 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › C-JID 0.59 50.0 3.13e-01 91.3% 25.6%
3903752 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 47.0 4.05e-01 91.3% 56.2%
3390438 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 50.0 4.08e-01 95.7% 52.0%
3929943 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.58 48.0 4.48e-01 94.2% 81.1%
3290413 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 41.0 3.39e-01 73.9% 88.2%
3509590 11.1.1.41 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.57 51.0 3.80e-01 95.7% 46.3%
3576642 11.1.1.41 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.57 48.0 3.67e-01 95.7% 45.9%
3212564 11.1.1.41 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.57 50.0 3.86e-01 95.7% 50.0%
4944742 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 47.0 3.78e-01 89.9% 57.7%
3797443 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 48.0 3.79e-01 97.1% 51.6%
3789329 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 50.0 3.67e-01 97.1% 46.1%
3999331 11.1.1.41 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.56 49.0 3.97e-01 95.7% 60.0%
5041017 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 45.0 4.12e-01 94.2% 67.8%
2772521 11.14.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domains in STT3 › Ig-like domains in STT3 › AglB_L1 0.55 43.0 3.86e-01 91.3% 61.1%
4973378 11.14.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domains in STT3 › Ig-like domains in STT3 0.55 42.0 3.94e-01 91.3% 67.1%
3224577 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 41.0 3.45e-01 87.0% 47.8%
1124210 54.1.1.7 beta barrels › EV matrix protein › EV matrix protein › EV matrix protein › Matrix_Pneumo_C 0.54 46.0 4.10e-01 92.8% 95.9%
5040902 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 41.0 3.50e-01 95.7% 48.3%
4960811 11.14.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domains in STT3 › Ig-like domains in STT3 › AglB_L1 0.54 43.0 3.88e-01 87.0% 67.4%
3230132 11.1.1.9 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N 0.54 46.0 3.57e-01 95.7% 57.3%
4368632 10.32.1.266 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GldH_lipo 0.54 44.0 3.45e-01 88.4% 50.4%
3846579 11.1.1.41 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.53 43.0 3.37e-01 94.2% 50.6%
3390499 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.53 45.0 3.62e-01 94.2% 65.0%
3628227 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.53 43.0 3.75e-01 94.2% 94.8%
119269 2492.1.1.21 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › APOBEC2 0.52 43.0 3.08e-01 88.4% 37.5%
4943952 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 43.0 3.41e-01 89.9% 48.6%
3247634 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.52 44.0 3.64e-01 98.6% 94.8%
4985246 11.14.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domains in STT3 › Ig-like domains in STT3 › AglB_L1 0.52 42.0 3.85e-01 91.3% 66.7%
3680066 10.10.1.5 beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › DUF7755 0.52 46.0 3.50e-01 97.1% 72.9%
3220055 11.1.1.1023 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MATH 0.51 43.0 3.57e-01 97.1% 99.2%
4979092 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 42.0 2.67e-01 91.3% 25.2%
5028640 230.2.1.1 a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.51 42.0 3.65e-01 97.1% 63.5%
3243158 11.10.1.6 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.50 40.0 3.35e-01 92.8% 92.6%
4956195 230.2.1.1 a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.50 41.0 3.66e-01 97.1% 63.6%