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glycoprotein

Euk-Vir

Datura_yellow_vein_nucleorhabdovirus

glycoprotein__YP_009176976__Datura_yellow_vein_nucleorhabdovirus__195059

Identity

Accession:
YP_009176976 ↗
Protein ID:
glycoprotein
Kingdom:
euk

Quality

68.9 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Betanucleorhabdovirus› Datura_yellow_vein_nucleorhabdovirus

TaxID: 195059

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 86-93_235-309
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.69 61.0 5.40e-01 100.0% 75.8%
4iapA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 60.0 5.85e-01 100.0% 95.7%
3pp2A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 58.0 5.28e-01 98.8% 97.3%
2p0hA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 58.0 5.20e-01 100.0% 94.1%
2oqbA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 57.0 5.30e-01 100.0% 92.6%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 58.0 5.46e-01 100.0% 97.0%
4d6wA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.65 56.0 5.40e-01 97.6% 89.5%
2cmzA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.64 57.0 5.48e-01 97.6% 88.2%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.64 55.0 4.23e-01 100.0% 56.8%
1bakA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 55.0 4.97e-01 100.0% 79.0%
1tj6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 54.0 4.94e-01 100.0% 93.0%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 54.0 4.63e-01 100.0% 88.6%
1v5pA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 52.0 4.95e-01 96.4% 98.1%
3n7cA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 53.0 4.98e-01 100.0% 95.4%
2cy5A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 52.0 4.64e-01 100.0% 96.9%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 52.0 4.55e-01 100.0% 74.6%
1i9gA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.59 39.0 4.27e-01 80.7% 87.5%
2cayB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 48.0 4.25e-01 100.0% 77.9%
1qwdB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 41.0 3.34e-01 79.5% 63.3%
2cztA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 41.0 3.40e-01 80.7% 71.0%
2eayB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 30.0 3.57e-01 79.5% 95.9%
8acrA01 3.50.30.30 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › 0.51 38.0 3.18e-01 79.5% 91.9%
5ixcA01 3.40.1090.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytosolic phospholipase A2 catalytic domain › Cytosolic phospholipase A2 catalytic domain 0.51 42.0 2.71e-01 94.0% 72.5%
3h7lA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 35.0 3.41e-01 72.3% 66.7%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 36.0 3.92e-01 85.5% 91.2%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3173787 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 60.0 5.39e-01 100.0% 89.2%
3680657 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.67 58.0 3.78e-01 100.0% 25.4%
3244907 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 59.0 5.79e-01 100.0% 98.9%
3167802 220.1.1.33 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_8 0.67 59.0 5.43e-01 100.0% 86.1%
3592788 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 58.0 5.22e-01 100.0% 90.8%
3604468 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 54.0 5.53e-01 98.8% 93.8%
5007103 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 55.0 5.60e-01 100.0% 96.2%
3734376 220.1.1.33 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_8 0.65 58.0 5.30e-01 100.0% 85.5%
4028811 10.13.1.0 ↗ beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A 0.65 57.0 5.14e-01 97.6% 84.3%
3756160 220.1.1.33 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_8 0.65 57.0 4.77e-01 100.0% 65.5%
3563663 220.1.1.33 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_8 0.64 57.0 5.39e-01 100.0% 93.0%
3739939 220.1.1.29 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_3 0.64 55.0 4.74e-01 100.0% 77.0%
3508939 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.63 55.0 4.81e-01 100.0% 76.9%
3876027 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.63 54.0 4.59e-01 100.0% 67.3%
3655242 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.63 55.0 4.50e-01 100.0% 75.6%
3690811 220.1.1.67 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › EVH1_PP4R3 0.63 54.0 5.15e-01 100.0% 98.0%
3785582 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.62 54.0 4.40e-01 100.0% 81.2%
3887129 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 55.0 5.40e-01 100.0% 93.3%
4019707 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 53.0 4.32e-01 100.0% 57.6%
3788745 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 53.0 4.51e-01 98.8% 69.0%
5079209 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 54.0 4.56e-01 100.0% 61.4%
3627795 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 51.0 5.06e-01 92.8% 92.9%
3388895 220.1.1.170 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_alsin 0.61 53.0 4.92e-01 100.0% 79.1%
3259098 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.61 53.0 4.75e-01 100.0% 77.5%
3998029 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 52.0 4.90e-01 98.8% 84.8%
3407757 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.60 52.0 4.56e-01 100.0% 72.3%
3591792 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 52.0 4.47e-01 100.0% 86.2%
3249490 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.60 51.0 4.67e-01 100.0% 80.0%
4946106 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 39.0 2.60e-01 85.5% 17.8%
3785491 220.1.1.26 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Vps36_ESCRT-II 0.57 49.0 4.32e-01 100.0% 76.2%
3225056 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 48.0 4.45e-01 100.0% 89.1%
4992470 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.55 35.0 3.96e-01 77.1% 90.0%
3812815 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.54 43.0 3.34e-01 88.0% 99.5%
3219807 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 36.0 3.78e-01 77.1% 77.3%
3704372 219.1.1.97 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CEPT76_peptidase 0.51 42.0 3.03e-01 94.0% 30.4%
4374415 375.1.1.30 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 0.51 33.0 3.47e-01 75.9% 73.3%
D2 high residues 97-229
PDB
Domain cluster: rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196
D3 medium residues 51-82_310-366
PDB
Domain cluster: rep: G__YP_224082__Taro_vein_chlorosis_virus__2908018__D43-73_311-367
D4 medium residues 367-472
PDB
Domain cluster: rep: glycoprotein__NP_042285__Sonchus_yellow_net_nucleorhabdovirus__11307__D390-473