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glycoprotein

Euk-Vir

Alfalfa_dwarf_virus

glycoprotein__YP_009177019__Alfalfa_dwarf_virus__998864

Identity

Accession:
YP_009177019 ↗
Protein ID:
glycoprotein
Kingdom:
euk

Quality

71.6 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Alphacytorhabdovirus› Alfalfa_dwarf_virus

TaxID: 998864

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 37-66_298-358
PDB
Domain cluster: rep: G__YP_224082__Taro_vein_chlorosis_virus__2908018__D43-73_311-367
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ekcF01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.61 52.0 3.67e-01 94.5% 41.6%
2j6lA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.61 51.0 3.58e-01 93.4% 42.0%
4hs5A00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.54 33.0 3.22e-01 85.7% 52.4%
1ex4B02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.54 25.0 3.01e-01 81.3% 64.4%
4hdjA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 36.0 2.45e-01 85.7% 18.6%
3i2nA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 44.0 3.09e-01 100.0% 99.1%
4abyD00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 46.0 3.17e-01 100.0% 32.5%
1gxrA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 43.0 3.03e-01 100.0% 89.9%
2w18A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 42.0 3.05e-01 97.8% 99.3%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3607176 101.17.1.4 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › HU-CCDC81_euk_2 0.63 43.0 4.55e-01 74.7% 78.0%
4382689 3018.1.1.0 ↗ a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like 0.56 45.0 4.58e-01 89.0% 87.8%
4937221 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.56 34.0 3.68e-01 98.9% 73.3%
4093822 3018.1.1.0 ↗ a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like 0.55 43.0 4.41e-01 91.2% 85.6%
4944418 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.55 35.0 3.72e-01 96.7% 76.0%
3646350 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.54 45.0 3.78e-01 90.1% 97.4%
3608479 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 42.0 2.62e-01 87.9% 24.4%
4944138 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 38.0 3.67e-01 90.1% 64.8%
4927204 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 40.0 4.11e-01 80.2% 97.8%
2623950 150.3.1.5 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › IL2 0.52 45.0 4.05e-01 96.7% 86.2%
3513247 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.52 35.0 3.46e-01 74.7% 65.3%
3599007 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 37.0 3.66e-01 79.1% 69.0%
3183393 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.52 38.0 3.80e-01 82.4% 74.7%
3278560 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 38.0 3.45e-01 78.0% 78.0%
4929358 223.2.1.62 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › DUF6659 0.51 39.0 3.52e-01 79.1% 79.2%
4943589 331.1.1.28 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › Fer4_7 0.51 40.0 3.40e-01 85.7% 62.5%
4977717 620.1.1.2 ↗ alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB 0.51 40.0 3.47e-01 84.6% 81.4%
4929825 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 37.0 3.36e-01 74.7% 76.5%
4325382 3018.1.1.0 ↗ a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like 0.51 41.0 3.89e-01 90.1% 83.5%
3704789 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.51 35.0 3.49e-01 78.0% 66.3%
5012894 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.51 31.0 3.30e-01 94.5% 70.7%
3601394 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 37.0 3.68e-01 80.2% 72.6%
4927211 223.2.1.62 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › DUF6659 0.51 38.0 3.50e-01 79.1% 73.3%
2779090 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.50 34.0 3.40e-01 74.7% 65.6%
4929561 223.2.1.62 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › DUF6659 0.50 39.0 3.50e-01 81.3% 72.0%
4928566 223.2.1.62 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › DUF6659 0.50 39.0 3.52e-01 81.3% 75.0%
3389592 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.50 34.0 3.28e-01 73.6% 60.6%
4929422 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 37.0 3.30e-01 78.0% 73.8%
4928738 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 38.0 3.36e-01 79.1% 75.0%
D2 medium residues 67-80_227-285
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gumB03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.70 55.0 4.71e-01 86.3% 91.7%
3fvcA03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.69 56.0 4.90e-01 89.0% 98.2%
4osnA00 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.68 54.0 4.78e-01 89.0% 99.1%
1ddvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 48.0 4.34e-01 84.9% 83.7%
3pp2A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 45.0 4.01e-01 84.9% 85.7%
1jiwI00 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.58 41.0 3.68e-01 74.0% 86.7%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 44.0 4.04e-01 83.6% 80.8%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 43.0 3.62e-01 86.3% 73.9%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 34.0 3.68e-01 72.6% 81.4%
2hgaA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.51 37.0 3.54e-01 76.7% 95.3%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 35.0 3.95e-01 82.2% 100.0%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3992986 220.4.1.0 ↗ beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins 0.67 52.0 5.16e-01 83.6% 100.0%
3523446 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.62 48.0 4.41e-01 86.3% 84.0%
3922234 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 46.0 4.04e-01 84.9% 76.5%
3935052 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.60 46.0 3.94e-01 87.7% 79.2%
3690811 220.1.1.67 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › EVH1_PP4R3 0.57 43.0 3.99e-01 83.6% 80.0%
3177469 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 40.0 4.11e-01 78.1% 92.9%
3990857 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 38.0 4.14e-01 95.9% 100.0%
3989372 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 34.0 3.83e-01 97.3% 100.0%
3718039 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 42.0 3.33e-01 100.0% 88.0%
4438983 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.50 38.0 3.54e-01 83.6% 66.3%
D3 medium residues 81-226
PDB
Domain cluster: rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dx0B01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.65 24.0 3.35e-01 82.9% 65.3%
1vwxS01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 25.0 3.38e-01 90.4% 87.3%
1alyA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.50 33.0 3.35e-01 84.9% 66.4%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1688016 220.3.1.3 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Glycoprot_B_PH1 0.76 66.0 5.78e-01 91.1% 98.6%
2530507 220.3.1.3 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Glycoprot_B_PH1 0.73 63.0 5.44e-01 91.8% 93.7%
3583154 220.3.1.0 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins 0.69 57.0 5.82e-01 88.4% 97.9%
1503409 220.3.1.1 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Rhabdo_glycop 0.65 53.0 5.60e-01 88.4% 97.0%
2124211 220.3.1.2 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 0.60 49.0 4.77e-01 87.7% 99.4%
2124201 220.3.1.2 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 0.60 48.0 4.76e-01 87.7% 100.0%
185186 220.3.1.2 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 0.59 48.0 4.74e-01 87.7% 100.0%
2464208 220.3.1.2 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 0.59 48.0 4.69e-01 87.7% 99.4%
3719115 220.4.1.6 ↗ beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins › Peptidase_M8 0.57 31.0 3.07e-01 89.0% 47.5%
3892842 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.56 25.0 3.61e-01 93.2% 92.3%
3713862 220.4.1.6 ↗ beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins › Peptidase_M8 0.54 30.0 3.72e-01 91.1% 88.8%
3475789 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.53 26.0 2.90e-01 87.7% 54.8%
3927415 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 26.0 3.13e-01 78.8% 68.3%
D4 medium residues 359-472
PDB