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glycoprotein

Euk-Vir

Changping_Tick_Virus_2

glycoprotein__YP_009177705__Changping_Tick_Virus_2__1608044

Identity

Accession:: YP_009177705 ↗
Protein ID:: glycoprotein
Kingdom:: euk

Quality

74.2 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Jingchuvirales› Chuviridae› Mivirus› Changping_Tick_Virus_2

TaxID: 1608044

Cluster

View cluster (20 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-48_369-458

PDB

Domain cluster: rep: glycoprotein__YP_010085028__Wuhan_sharpbelly_bornavirus__2116489__D17-38_270-380

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF24664.2 best	Monjiviricetes_fusion	114.4	5.50e-33	79.0%	13.2%

D2 high residues 74-222

PDB

Domain cluster: rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF24664.2 best	Monjiviricetes_fusion	130.7	6.60e-38	100.0%	22.5%

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1egjA00	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.63	27.0	3.25e-01	96.6%	57.4%
1ok8A03	3.30.387.10	Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 3 › Viral Envelope Glycoprotein, domain 3	0.63	27.0	3.55e-01	73.8%	71.6%
3up1A02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.57	26.0	3.01e-01	96.6%	56.7%
3nkgA00	2.60.120.790	Mainly Beta › Sandwich › Jelly Rolls ›	0.55	28.0	2.74e-01	75.2%	42.4%
1m0wA02	3.30.470.20	Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain	0.54	25.0	2.86e-01	96.6%	55.6%
2hgsA02	3.30.470.20	Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain	0.50	25.0	2.87e-01	96.6%	59.5%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1503409	220.3.1.1 ↗	beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Rhabdo_glycop	0.69	51.0	5.42e-01	100.0%	87.1%
185186	220.3.1.2 ↗	beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64	0.60	56.0	5.53e-01	100.0%	95.6%
3892842	3115.1.1.0 ↗	a+b two layers › GP2-like › RplX-like › RplX-like	0.59	26.0	3.66e-01	98.7%	89.2%
3839466	284.1.1.1 ↗	a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP_C	0.59	36.0	4.16e-01	93.3%	84.8%
3374402	284.1.1.0 ↗	a+b two layers › FKBP-like › FKBP-like › FKBP-like	0.58	40.0	4.18e-01	99.3%	77.0%
3479971	11.2.1.58 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PF26186	0.57	43.0	4.03e-01	77.9%	95.5%
3732370	3115.1.1.0 ↗	a+b two layers › GP2-like › RplX-like › RplX-like	0.56	25.0	3.61e-01	75.8%	100.0%
4032409	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.55	29.0	3.74e-01	97.3%	94.7%
3965794	304.133.1.1 ↗	a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL	0.54	33.0	4.11e-01	100.0%	97.9%
3262971	11.2.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain	0.51	41.0	4.23e-01	85.2%	97.9%
3924844	304.112.1.0 ↗	a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain	0.51	36.0	3.85e-01	73.2%	100.0%

D3 medium residues 49-73_235-310

PDB

Domain cluster: rep: putative_glycoprotein__YP_009337429__Sanxia_atyid_shrimp_virus_4__1923358__D55-73_241-318

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF24664.2 best	Monjiviricetes_fusion	53.3	1.70e-14	95.0%	12.1%

D4 medium residues 311-368_492-511

PDB

Domain cluster: rep: putative_glycoprotein__YP_009337429__Sanxia_atyid_shrimp_virus_4__1923358__D36-54_319-398

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF24664.2 best	Monjiviricetes_fusion	54.2	9.30e-15	78.2%	9.0%