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glycoprotein

Euk-Vir

Tacheng_Tick_Virus_4

glycoprotein__YP_009177714__Tacheng_Tick_Virus_4__1608086

Identity

Accession:
YP_009177714 ↗
Protein ID:
glycoprotein
Kingdom:
euk

Quality

71.1 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Jingchuvirales› Chuviridae› Morsusvirus› Tacheng_Tick_Virus_4

TaxID: 1608086

Cluster

View cluster (20 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 40-60_316-398
PDB
Domain cluster: rep: putative_glycoprotein__YP_009337429__Sanxia_atyid_shrimp_virus_4__1923358__D36-54_319-398
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24664.2 best Monjiviricetes_fusion 44.9 6.00e-12 95.2% 13.2%
D2 medium residues 61-76_239-315
PDB
Domain cluster: rep: putative_glycoprotein__YP_009337429__Sanxia_atyid_shrimp_virus_4__1923358__D55-73_241-318
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1mkeA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 55.0 4.80e-01 88.2% 61.1%
4d6wA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.67 51.0 5.13e-01 84.9% 78.9%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 36.0 4.50e-01 77.4% 100.0%
1ddvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 51.0 4.99e-01 87.1% 87.5%
1v5mA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 51.0 4.56e-01 88.2% 73.5%
2p0hA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 51.0 4.76e-01 88.2% 83.1%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 51.0 4.58e-01 90.3% 69.4%
4wsfA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 47.0 4.52e-01 81.7% 74.8%
1kz7C02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 50.0 4.46e-01 89.2% 72.3%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 37.0 4.23e-01 84.9% 84.6%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 38.0 4.55e-01 82.8% 100.0%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 36.0 4.15e-01 83.9% 88.7%
5lhrA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 36.0 3.34e-01 87.1% 47.0%
1zunB02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 37.0 3.78e-01 87.1% 64.4%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 40.0 4.34e-01 87.1% 86.8%
1r8nA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.58 45.0 3.67e-01 84.9% 89.2%
5c94A00 2.40.10.250 Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 0.58 38.0 3.59e-01 77.4% 53.4%
2gk6A02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.57 35.0 3.73e-01 84.9% 69.9%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 36.0 3.98e-01 87.1% 81.3%
4he6A00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 35.0 3.64e-01 84.9% 66.3%
2vldB01 2.70.180.20 Mainly Beta › Distorted Sandwich › Protein Yojf; Chain: A; › 0.56 45.0 4.17e-01 88.2% 89.0%
6qp9B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 38.0 2.48e-01 72.0% 36.0%
1sg5A01 2.30.30.400 Mainly Beta › Roll › SH3 type barrels. › Rof-like 0.56 38.0 4.14e-01 89.2% 87.0%
1qwdB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 43.0 3.71e-01 92.5% 82.5%
2rckA01 3.15.10.30 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain 0.54 41.0 3.17e-01 82.8% 72.9%
1h91A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 44.0 3.63e-01 92.5% 77.8%
4epcA02 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.53 38.0 4.29e-01 82.8% 100.0%
2w7qB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.52 41.0 3.39e-01 87.1% 77.8%
2cm4A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 42.0 3.77e-01 92.5% 89.0%
4mxtA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.52 37.0 3.06e-01 76.3% 84.5%
4kc7A02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.52 39.0 3.91e-01 83.9% 99.0%
2q18X02 3.90.850.10 Alpha Beta › Alpha-Beta Complex › Fumarylacetoacetate hydrolase; domain 2 › Fumarylacetoacetase-like, C-terminal domain 0.50 41.0 3.17e-01 88.2% 65.6%
2lfuA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.50 39.0 3.56e-01 86.0% 84.5%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3927305 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 55.0 5.19e-01 84.9% 87.3%
3713334 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.66 41.0 4.89e-01 81.7% 96.7%
3497365 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.66 39.0 4.72e-01 80.6% 98.2%
3702154 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 42.0 4.65e-01 87.1% 81.3%
5013238 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 52.0 4.80e-01 88.2% 80.8%
2797459 220.1.1.3 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1,Retinal 0.64 53.0 4.98e-01 91.4% 86.7%
3873394 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.64 52.0 4.48e-01 91.4% 63.2%
2727964 4.1.1.105 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5604 0.63 40.0 4.76e-01 82.8% 100.0%
4927397 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 51.0 4.25e-01 88.2% 67.3%
4161673 4.1.1.105 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5604 0.63 40.0 4.17e-01 86.0% 70.6%
4565837 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.63 40.0 3.99e-01 86.0% 62.1%
3412900 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 50.0 4.68e-01 89.2% 85.2%
3738641 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.61 38.0 4.17e-01 86.0% 78.7%
3591381 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 49.0 4.35e-01 88.2% 62.5%
3777215 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 47.0 4.62e-01 87.1% 79.0%
3407711 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.60 40.0 3.96e-01 84.9% 64.0%
3511375 4.1.1.349 ↗ beta barrels › SH3 › SH3 › SH3 › ROF 0.60 39.0 4.08e-01 88.2% 72.9%
4937389 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.59 39.0 3.77e-01 89.2% 57.3%
4024501 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 47.0 4.59e-01 88.2% 83.8%
3917372 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.59 39.0 4.24e-01 89.2% 84.0%
4020023 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.59 39.0 3.90e-01 84.9% 66.3%
154312 4.1.1.65 ↗ beta barrels › SH3 › SH3 › SH3 › 53-BP1_Tudor 0.58 36.0 3.95e-01 86.0% 80.0%
3597379 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 47.0 4.47e-01 88.2% 83.6%
3217506 9.1.1.50 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7042 0.58 45.0 4.13e-01 82.8% 94.2%
5055513 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.58 46.0 4.28e-01 87.1% 71.7%
4497415 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.58 46.0 4.25e-01 88.2% 85.6%
3247329 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 45.0 4.32e-01 86.0% 73.6%
3699067 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.57 38.0 3.73e-01 87.1% 63.0%
3596842 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 46.0 4.27e-01 89.2% 91.7%
3243776 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.57 45.0 4.28e-01 86.0% 84.5%
3890922 220.1.1.132 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.57 44.0 4.30e-01 86.0% 76.2%
5029658 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.57 45.0 4.27e-01 87.1% 79.1%
4956775 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.57 38.0 3.77e-01 89.2% 65.0%
3609858 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.56 45.0 4.37e-01 88.2% 86.7%
4948685 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.56 45.0 4.28e-01 88.2% 95.6%
4355868 71.1.1.2 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.56 44.0 3.48e-01 84.9% 76.4%
3281271 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.56 36.0 3.69e-01 84.9% 67.8%
4931033 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.56 45.0 4.10e-01 88.2% 87.2%
3637508 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.55 35.0 4.03e-01 90.3% 90.8%
5032454 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.55 39.0 3.53e-01 86.0% 53.1%
3391330 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.55 45.0 4.18e-01 92.5% 100.0%
3519774 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 34.0 3.34e-01 90.3% 55.2%
4942135 9.2.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin 0.55 43.0 3.95e-01 86.0% 96.8%
3286662 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.54 36.0 3.54e-01 86.0% 62.0%
3989970 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 37.0 4.24e-01 82.8% 100.0%
4123780 71.1.1.2 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.54 40.0 3.18e-01 78.5% 86.0%
3933168 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.54 42.0 3.48e-01 87.1% 90.6%
5039819 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.53 42.0 3.83e-01 88.2% 85.4%
3281618 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.53 40.0 3.93e-01 86.0% 75.0%
3833703 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 40.0 2.59e-01 82.8% 77.8%
4956630 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.52 40.0 3.41e-01 91.4% 49.7%
3715285 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.52 40.0 3.44e-01 92.5% 51.0%
4314973 71.1.1.2 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.51 40.0 3.24e-01 86.0% 74.7%
3793656 4.1.1.169 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4819 0.51 42.0 3.68e-01 93.5% 58.6%
4133228 71.1.1.2 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.51 40.0 3.17e-01 82.8% 75.1%
3692266 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 36.0 2.44e-01 74.2% 33.2%
4049910 375.14.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) 0.51 27.0 3.40e-01 79.6% 100.0%
3965943 71.1.1.2 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.50 39.0 3.19e-01 87.1% 75.6%
D3 medium residues 77-88_192-238
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1x4rA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.63 51.0 4.77e-01 96.6% 87.3%
2b25A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.61 47.0 4.82e-01 86.4% 93.0%
1wzoA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.58 37.0 4.24e-01 84.7% 97.5%
2m6pA00 2.20.28.270 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase-binding protein A 0.58 39.0 4.21e-01 86.4% 91.3%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 47.0 3.49e-01 98.3% 44.5%
2m4vA00 2.20.28.270 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase-binding protein A 0.52 42.0 3.87e-01 100.0% 67.5%
4j27A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 36.0 3.22e-01 86.4% 49.4%
2bf6A02 2.40.220.10 Mainly Beta › Beta Barrel › Intramolecular trans-sialidase; domain 3 › Intramolecular Trans-sialidase; Domain 3 0.52 35.0 3.41e-01 88.1% 63.6%
3gbwA00 2.60.120.820 Mainly Beta › Sandwich › Jelly Rolls › PHR domain 0.51 44.0 3.27e-01 100.0% 77.6%
3alxC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 39.0 3.45e-01 94.9% 65.0%
5yxkA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 38.0 3.36e-01 94.9% 60.9%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3598793 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.64 51.0 4.12e-01 89.8% 97.5%
3420784 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.58 46.0 3.90e-01 89.8% 79.0%
3664328 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.52 36.0 2.93e-01 74.6% 84.0%
4045485 3943.1.1.1 ↗ beta sandwiches › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains 0.52 41.0 3.73e-01 93.2% 71.8%
3883846 11.1.1.852 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28276 0.51 39.0 3.22e-01 94.9% 62.9%
5052270 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.51 40.0 3.50e-01 89.8% 55.8%
5049693 4081.1.1.0 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.50 39.0 2.80e-01 98.3% 89.4%
3247984 11.21.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.50 38.0 3.51e-01 84.7% 67.5%
D4 medium residues 89-191
PDB
Domain cluster: rep: glycoprotein__YP_009388620__Culex_mononega-like_virus_2__2010272__D72-178
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24664.2 best Monjiviricetes_fusion 62.1 3.80e-17 100.0% 15.3%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2orzA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 33.0 2.88e-01 98.1% 37.7%
6qwrA01 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.52 46.0 3.81e-01 100.0% 92.6%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3606414 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.53 47.0 3.78e-01 98.1% 95.6%
4042627 5084.1.1.10 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl 0.52 44.0 3.85e-01 98.1% 97.6%
D5 medium residues 399-465
PDB
Domain cluster: rep: glycoprotein__YP_009666281__Drosophila_unispina_virus_1__1802951__D393-466
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24664.2 best Monjiviricetes_fusion 54.2 9.20e-15 98.5% 9.6%