←Back to structures

glycoprotein

Euk-Vir

Bole_Tick_Virus_2

glycoprotein__YP_009287863__Bole_Tick_Virus_2__1608041

Identity

Accession:
YP_009287863 ↗
Protein ID:
glycoprotein
Kingdom:
euk

Quality

73.6 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Alpharicinrhavirus› Bole_Tick_Virus_2

TaxID: 1608041

Cluster

View cluster (24 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 29-59_295-419
PDB
Domain cluster: rep: glycoprotein__YP_010086563__Kwatta_virus__1272945__D21-47_334-461
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24833.2 best Rhabdo_glycop_CD 74.1 1.60e-20 69.9% 80.2%
D2 high residues 66-77_207-285
PDB
Domain cluster: rep: glycoprotein__YP_009305101__Wuhan_Louse_Fly_Virus_5__1608119__D70-87_212-294
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cmzA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.76 65.0 6.52e-01 92.3% 96.8%
4d6wA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.76 65.0 6.47e-01 92.3% 96.8%
1v5pA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.69 53.0 5.17e-01 83.5% 98.1%
1wi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 52.0 4.88e-01 85.7% 93.7%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 33.0 3.81e-01 75.8% 70.3%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.61 35.0 4.10e-01 76.9% 83.3%
2w7qB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.58 43.0 3.50e-01 80.2% 77.2%
6x1kA01 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.57 43.0 4.00e-01 80.2% 98.3%
2avwD01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 40.0 3.54e-01 76.9% 59.6%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.55 29.0 3.70e-01 73.6% 95.8%
4r8tB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 37.0 4.07e-01 81.3% 87.7%
6r3wA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 40.0 3.38e-01 79.1% 90.7%
4tkoB01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.54 34.0 3.46e-01 79.1% 63.0%
2gk6A02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.54 34.0 3.56e-01 75.8% 69.9%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 32.0 3.84e-01 71.4% 94.9%
1b12C01 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.51 34.0 3.09e-01 75.8% 50.4%
3buuB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.51 37.0 2.89e-01 79.1% 84.1%
2as9B01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 39.0 3.76e-01 85.7% 73.3%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.51 31.0 3.30e-01 74.7% 69.6%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3390227 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 56.0 5.33e-01 89.0% 95.2%
4949773 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.66 38.0 3.19e-01 76.9% 35.9%
3368254 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.65 38.0 4.59e-01 74.7% 94.5%
3660244 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.65 39.0 4.24e-01 76.9% 72.0%
3718643 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 54.0 4.73e-01 93.4% 98.6%
3445812 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 51.0 4.47e-01 86.8% 78.6%
3213122 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.64 38.0 3.60e-01 79.1% 50.5%
4957336 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 51.0 3.35e-01 87.9% 88.4%
3587906 4.1.1.46 ↗ beta barrels › SH3 › SH3 › SH3 › VEG 0.63 41.0 4.37e-01 76.9% 75.0%
3315951 220.1.1.86 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.63 46.0 4.87e-01 76.9% 93.7%
3824346 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 42.0 4.46e-01 83.5% 81.2%
3423337 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.61 41.0 4.39e-01 82.4% 80.0%
3336357 3794.1.1.4 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › MCCA_BT 0.60 44.0 3.63e-01 76.9% 57.6%
3818428 4.1.1.66 ↗ beta barrels › SH3 › SH3 › SH3 › LBR_tudor 0.59 40.0 4.39e-01 82.4% 85.3%
3841414 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.59 34.0 3.86e-01 75.8% 74.3%
3936885 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 32.0 3.70e-01 75.8% 73.8%
4988761 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.58 39.0 3.98e-01 79.1% 70.0%
4982722 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.58 37.0 3.87e-01 78.0% 69.4%
3600139 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 41.0 3.85e-01 76.9% 60.9%
3170444 2008.6.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central 0.58 36.0 2.83e-01 95.6% 28.0%
3224710 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.58 40.0 4.27e-01 79.1% 86.7%
5043132 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.57 38.0 3.91e-01 79.1% 71.8%
3858886 4.1.1.169 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4819 0.56 32.0 3.77e-01 75.8% 85.0%
3475240 4.1.1.304 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.56 32.0 3.81e-01 72.5% 92.7%
3290160 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.55 30.0 3.18e-01 84.6% 58.7%
4466506 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 35.0 3.82e-01 76.9% 78.7%
4625654 4.1.1.445 ↗ beta barrels › SH3 › SH3 › SH3 › Spore_GerQ 0.54 36.0 3.92e-01 82.4% 82.7%
3957374 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.53 33.0 3.63e-01 76.9% 80.0%
3619619 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 31.0 3.38e-01 76.9% 72.9%
4069560 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 33.0 3.61e-01 76.9% 78.7%
3356605 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.52 38.0 3.89e-01 76.9% 80.0%
4537757 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.52 34.0 3.17e-01 76.9% 51.7%
3747656 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.52 43.0 3.66e-01 92.3% 84.0%
3184235 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.51 36.0 3.13e-01 79.1% 46.2%
3708505 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 39.0 3.40e-01 80.2% 77.0%
3755109 2487.1.1.7 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA 0.50 37.0 3.15e-01 76.9% 97.2%
D3 high residues 80-199
PDB
Domain cluster: rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00974.25 best Rhabdo_glycop_FD 98.9 3.40e-28 84.2% 100.0%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2hgsA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.57 32.0 3.30e-01 80.8% 56.8%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 27.0 3.30e-01 100.0% 72.4%
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 25.0 3.14e-01 100.0% 74.6%
1vwxS02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 26.0 3.17e-01 100.0% 72.4%
4a18X01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.50 26.0 3.04e-01 100.0% 70.9%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1503409 220.3.1.1 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Rhabdo_glycop 0.92 88.0 8.52e-01 100.0% 91.7%
2124201 220.3.1.2 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 0.66 58.0 5.36e-01 99.2% 98.1%
2530507 220.3.1.3 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Glycoprot_B_PH1 0.66 59.0 4.84e-01 100.0% 88.8%
2124211 220.3.1.2 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 0.65 58.0 5.32e-01 100.0% 96.9%
2464208 220.3.1.2 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 0.64 57.0 5.25e-01 100.0% 96.9%
4990637 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.59 27.0 3.22e-01 100.0% 61.4%
5065436 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.56 27.0 3.49e-01 100.0% 84.4%
3508212 3115.1.1.6 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 0.55 29.0 3.74e-01 85.8% 88.6%
4951473 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.54 27.0 3.46e-01 100.0% 87.3%
1442393 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.54 26.0 2.79e-01 100.0% 48.6%
3220637 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.53 38.0 3.86e-01 73.3% 100.0%
3280008 3115.1.1.2 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › DUF4288 0.51 35.0 3.98e-01 91.7% 94.4%
3405278 382.1.1.3 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Activin_recp 0.51 30.0 3.19e-01 91.7% 66.0%
4648475 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.50 26.0 3.47e-01 95.0% 100.0%