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glycoprotein
Euk-VirHuangpi_Tick_Virus_3
glycoprotein__YP_009288321__Huangpi_Tick_Virus_3__1608049
Identity
- Accession:
- YP_009288321 ↗
- Protein ID:
- glycoprotein
- Kingdom:
- euk
Quality
57.9
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Rhabdoviridae›
Alpharicinrhavirus›
Huangpi_Tick_Virus_3
TaxID: 1608049
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 49-69_202-283
Domain cluster:
rep: glycoprotein__YP_009305101__Wuhan_Louse_Fly_Virus_5__1608119__D70-87_212-294
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4d6wA03 | 2.30.29.130 | Mainly Beta › Roll › PH-domain like › | 0.84 | 71.0 | 7.38e-01 | 89.3% | 100.0% |
| 2cmzA03 | 2.30.29.130 | Mainly Beta › Roll › PH-domain like › | 0.76 | 64.0 | 6.67e-01 | 89.3% | 100.0% |
| 1h10A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.71 | 56.0 | 5.37e-01 | 83.5% | 89.7% |
| 2d9wA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.71 | 53.0 | 5.24e-01 | 79.6% | 100.0% |
| 2kieA00 | 2.30.29.110 | Mainly Beta › Roll › PH-domain like › | 0.68 | 55.0 | 5.16e-01 | 87.4% | 90.3% |
| 1txdA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.67 | 55.0 | 5.23e-01 | 88.3% | 87.6% |
| 1v5mA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.67 | 51.0 | 4.71e-01 | 82.5% | 81.6% |
| 4chmB00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.67 | 51.0 | 4.83e-01 | 81.6% | 81.5% |
| 5u78C00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.66 | 51.0 | 4.93e-01 | 82.5% | 95.7% |
| 3fssA01 | 2.30.29.120 | Mainly Beta › Roll › PH-domain like › | 0.65 | 54.0 | 4.94e-01 | 89.3% | 99.3% |
| 1q67A01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.65 | 53.0 | 4.77e-01 | 87.4% | 97.1% |
| 2elbA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.64 | 49.0 | 4.96e-01 | 80.6% | 85.3% |
| 4hdoA03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.64 | 48.0 | 5.07e-01 | 80.6% | 93.5% |
| 4k17B01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.64 | 52.0 | 5.08e-01 | 88.3% | 83.8% |
| 2aehA03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.63 | 49.0 | 4.85e-01 | 83.5% | 98.2% |
| 3voqA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.63 | 48.0 | 4.68e-01 | 81.6% | 84.5% |
| 2y7bA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.62 | 48.0 | 4.44e-01 | 83.5% | 91.8% |
| 4q0yA00 | 2.60.40.4400 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 38.0 | 3.52e-01 | 83.5% | 55.7% |
| 2d0bA01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.53 | 33.0 | 3.53e-01 | 74.8% | 71.9% |
| 5tf2A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 43.0 | 3.07e-01 | 96.1% | 45.0% |
ECOD (59)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3877360 | 220.1.1.66 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH | 0.71 | 59.0 | 5.49e-01 | 88.3% | 85.6% |
| 3877687 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.70 | 56.0 | 5.20e-01 | 85.4% | 90.8% |
| 3560565 | 220.1.1.47 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 | 0.70 | 57.0 | 4.49e-01 | 87.4% | 52.4% |
| 3473227 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.70 | 57.0 | 4.85e-01 | 87.4% | 69.1% |
| 3797608 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.70 | 53.0 | 5.25e-01 | 80.6% | 86.4% |
| 3497046 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.70 | 57.0 | 5.55e-01 | 88.3% | 96.5% |
| 3414375 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.70 | 57.0 | 5.29e-01 | 87.4% | 83.6% |
| 3887822 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.69 | 57.0 | 5.37e-01 | 88.3% | 85.6% |
| 3237220 | 220.1.1.84 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_15 | 0.69 | 56.0 | 5.42e-01 | 86.4% | 99.1% |
| 3263571 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.69 | 56.0 | 4.70e-01 | 87.4% | 64.0% |
| 3249381 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.69 | 57.0 | 4.83e-01 | 88.3% | 78.8% |
| 3555102 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.69 | 55.0 | 5.22e-01 | 85.4% | 99.2% |
| 3508601 | 220.1.1.47 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 | 0.68 | 56.0 | 4.57e-01 | 88.3% | 59.5% |
| 3523477 | 220.1.1.66 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH | 0.68 | 56.0 | 4.58e-01 | 87.4% | 62.2% |
| 3861569 | 220.1.1.56 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › ASK_PH | 0.68 | 52.0 | 5.03e-01 | 80.6% | 84.3% |
| 3591463 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.68 | 55.0 | 5.37e-01 | 87.4% | 82.6% |
| 3251857 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.68 | 56.0 | 5.09e-01 | 88.3% | 74.1% |
| 3919705 | 220.1.1.47 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 | 0.68 | 54.0 | 3.57e-01 | 87.4% | 24.5% |
| 3789025 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.68 | 55.0 | 5.03e-01 | 87.4% | 71.9% |
| 3771814 | 220.1.1.47 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 | 0.68 | 54.0 | 4.51e-01 | 87.4% | 55.1% |
| 3862184 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.67 | 55.0 | 5.06e-01 | 88.3% | 83.6% |
| 4241432 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.67 | 55.0 | 5.18e-01 | 88.3% | 81.6% |
| 3891866 | 220.1.1.49 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Carm_PH | 0.67 | 56.0 | 5.09e-01 | 91.3% | 79.3% |
| 3276783 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.67 | 54.0 | 4.98e-01 | 87.4% | 83.7% |
| 1292509 | 220.1.1.47 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 | 0.67 | 54.0 | 5.19e-01 | 87.4% | 89.9% |
| 3785014 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.67 | 55.0 | 4.70e-01 | 88.3% | 84.2% |
| 3901160 | 220.1.1.47 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 | 0.67 | 54.0 | 4.50e-01 | 88.3% | 56.2% |
| 3259097 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.67 | 56.0 | 5.23e-01 | 90.3% | 89.6% |
| 3249874 | 220.1.1.28 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › hSac2 | 0.67 | 56.0 | 4.84e-01 | 91.3% | 89.4% |
| 3536818 | 220.1.1.49 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Carm_PH | 0.67 | 56.0 | 5.26e-01 | 91.3% | 88.8% |
| 3929075 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.66 | 58.0 | 5.20e-01 | 96.1% | 86.2% |
| 4304407 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.66 | 54.0 | 4.93e-01 | 87.4% | 80.7% |
| 4121439 | 220.1.1.217 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH, GRAM | 0.66 | 52.0 | 3.50e-01 | 83.5% | 26.8% |
| 3918879 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.66 | 54.0 | 4.77e-01 | 88.3% | 68.7% |
| 3167811 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.66 | 54.0 | 4.99e-01 | 89.3% | 90.4% |
| 3923434 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.66 | 53.0 | 4.74e-01 | 88.3% | 80.7% |
| 3471154 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.66 | 51.0 | 4.91e-01 | 84.5% | 93.3% |
| 4674129 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.66 | 51.0 | 5.10e-01 | 83.5% | 89.5% |
| 3576021 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.65 | 53.0 | 4.91e-01 | 87.4% | 73.8% |
| 3556135 | 220.1.1.49 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Carm_PH | 0.65 | 54.0 | 4.78e-01 | 90.3% | 76.0% |
| 3709132 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.65 | 54.0 | 5.02e-01 | 89.3% | 84.6% |
| 3714509 | 220.1.1.303 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26278 | 0.65 | 52.0 | 4.54e-01 | 86.4% | 68.4% |
| 4488977 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.65 | 53.0 | 4.79e-01 | 88.3% | 77.9% |
| 3173029 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.65 | 52.0 | 4.32e-01 | 88.3% | 53.2% |
| 4202484 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.64 | 52.0 | 4.45e-01 | 88.3% | 61.8% |
| 3388895 | 220.1.1.170 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_alsin | 0.64 | 52.0 | 5.15e-01 | 88.3% | 87.3% |
| 3519971 | 220.1.1.32 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Sec3-PIP2_bind | 0.64 | 53.0 | 4.49e-01 | 91.3% | 76.6% |
| 3793738 | 220.1.1.32 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Sec3-PIP2_bind | 0.64 | 53.0 | 4.74e-01 | 90.3% | 84.1% |
| 3263774 | 220.1.1.121 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SLA1 | 0.63 | 53.0 | 4.64e-01 | 91.3% | 74.2% |
| 3782222 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.63 | 51.0 | 4.49e-01 | 88.3% | 64.5% |
| 3743890 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.63 | 51.0 | 4.57e-01 | 87.4% | 67.6% |
| 3917637 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.63 | 51.0 | 4.54e-01 | 88.3% | 72.0% |
| 3262203 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.62 | 48.0 | 4.26e-01 | 83.5% | 57.4% |
| 3258360 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.62 | 52.0 | 5.19e-01 | 91.3% | 96.2% |
| 4932562 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.62 | 49.0 | 4.73e-01 | 84.5% | 89.6% |
| 4270579 | 220.1.1.121 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SLA1 | 0.62 | 48.0 | 4.77e-01 | 82.5% | 88.6% |
| 3704544 | 220.1.1.12 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Myosin_TH1 | 0.60 | 53.0 | 4.74e-01 | 98.1% | 85.5% |
| 4012071 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 47.0 | 3.20e-01 | 94.2% | 49.4% |
| 3595969 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.53 | 38.0 | 3.73e-01 | 85.4% | 68.7% |
D2
medium
residues 74-198
Domain cluster:
rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1m0wA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.61 | 30.0 | 3.26e-01 | 76.8% | 53.7% |
| 3egrA00 | 3.10.20.520 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B | 0.57 | 27.0 | 3.50e-01 | 100.0% | 84.1% |
| 1vwxS02 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.56 | 28.0 | 3.38e-01 | 100.0% | 73.7% |
| 2ksvA00 | 3.10.620.30 | Alpha Beta › Roll › C8orf32 fold › | 0.51 | 32.0 | 2.82e-01 | 100.0% | 42.2% |
| 2jwyA01 | 2.60.40.1620 | Mainly Beta › Sandwich › Immunoglobulin-like › Lipoprotein YajI-like | 0.51 | 28.0 | 2.79e-01 | 100.0% | 47.4% |
| 3eipA00 | 3.10.50.20 | Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein | 0.51 | 33.0 | 3.96e-01 | 84.0% | 100.0% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1503409 | 220.3.1.1 ↗ | beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Rhabdo_glycop | 0.80 | 75.0 | 7.38e-01 | 100.0% | 98.5% |
| 1688016 | 220.3.1.3 ↗ | beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Glycoprot_B_PH1 | 0.69 | 63.0 | 5.24e-01 | 99.2% | 95.2% |
| 2530507 | 220.3.1.3 ↗ | beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Glycoprot_B_PH1 | 0.68 | 61.0 | 5.05e-01 | 99.2% | 90.6% |
| 3602859 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 27.0 | 3.15e-01 | 84.8% | 66.7% |
| 3967397 | 7503.1.1.8 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › DUF4136 | 0.51 | 35.0 | 3.28e-01 | 83.2% | 58.7% |
| 3525969 | 11.1.1.239 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG3 | 0.50 | 28.0 | 2.95e-01 | 90.4% | 58.3% |