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glycoprotein

Euk-Vir

Wuhan_Insect_virus_7

glycoprotein__YP_009301742__Wuhan_Insect_virus_7__1608112

Identity

Accession:
YP_009301742 ↗
Protein ID:
glycoprotein
Kingdom:
euk

Quality

71.1 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Wuhan_Insect_virus_7

TaxID: 1608112

Cluster

View cluster (70 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-42_301-428
PDB
Domain cluster: rep: glycoprotein__YP_010086563__Kwatta_virus__1272945__D21-47_334-461
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24833.2 best Rhabdo_glycop_CD 30.6 4.60e-07 68.9% 71.9%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.77 26.0 4.11e-01 75.5% 75.0%
4d6wA01 2.30.30.640 Mainly Beta › Roll › SH3 type barrels. › Rhabdovirus spike glycoprotein G, lateral domain 0.73 44.0 5.47e-01 84.1% 96.7%
2b2cA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.69 26.0 4.01e-01 75.5% 82.8%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 24.0 3.28e-01 84.1% 80.6%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 24.0 3.03e-01 86.8% 63.0%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 30.0 3.68e-01 83.4% 92.0%
2mm0A00 2.10.70.110 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.50 22.0 3.08e-01 81.5% 90.6%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3889621 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.58 23.0 3.50e-01 84.1% 88.3%
3704939 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 29.0 3.57e-01 80.8% 91.1%
D2 medium residues 43-71_193-300
PDB
Domain cluster: rep: glycoprotein__YP_009305101__Wuhan_Louse_Fly_Virus_5__1608119__D70-87_212-294
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4d6wA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.79 54.0 6.39e-01 75.9% 100.0%
2cmzA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.76 51.0 6.04e-01 79.6% 100.0%
7csoA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 42.0 4.42e-01 70.8% 92.9%
4nswA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 41.0 4.50e-01 70.1% 89.9%
1bakA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 40.0 4.23e-01 70.1% 82.4%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 41.0 4.08e-01 73.0% 95.7%
1w1hD00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 39.0 3.92e-01 71.5% 68.6%
3k1lA01 3.30.457.40 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.55 29.0 3.48e-01 77.4% 76.1%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 24.0 3.23e-01 70.1% 84.8%
1ocsA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 28.0 2.90e-01 94.9% 52.3%
1d8cA02 2.170.170.11 Mainly Beta › Beta Complex › Malate synthase G - maily-beta sub-domain › Malate synthase G - maily-beta sub-domain 0.50 26.0 2.75e-01 75.9% 51.6%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3580912 220.1.1.158 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.64 44.0 4.29e-01 70.1% 76.0%
3475361 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 42.0 4.36e-01 70.1% 80.8%
3414375 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 41.0 4.28e-01 72.3% 85.9%
3178693 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 42.0 4.46e-01 74.5% 93.3%
3553515 197.1.1.1 ↗ alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › FERM_M 0.58 41.0 3.19e-01 72.3% 68.8%
3264377 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 40.0 4.22e-01 70.8% 92.5%
3197669 220.1.1.188 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BUD3_C 0.56 39.0 3.73e-01 71.5% 88.5%
3860032 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 38.0 4.33e-01 70.8% 95.0%
1699772 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.53 27.0 3.37e-01 70.8% 81.8%
3786534 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.51 37.0 3.43e-01 76.6% 83.9%
3494765 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.50 27.0 2.33e-01 77.4% 30.0%
D3 medium residues 72-184
PDB
Domain cluster: rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00974.25 best Rhabdo_glycop_FD 84.5 1.00e-23 85.8% 96.9%
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4njcA00 3.10.20.730 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like 0.56 24.0 3.12e-01 100.0% 70.0%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1503409 220.3.1.1 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Rhabdo_glycop 0.92 88.0 8.29e-01 100.0% 85.6%
3508212 3115.1.1.6 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 0.64 31.0 3.82e-01 100.0% 72.9%
3220637 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.51 38.0 3.80e-01 77.0% 97.4%
3280008 3115.1.1.2 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › DUF4288 0.51 37.0 4.05e-01 95.6% 93.3%
3941935 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.51 31.0 3.11e-01 77.0% 60.0%
4648475 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.51 28.0 3.59e-01 96.5% 100.0%