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glycoprotein
Euk-VirXincheng_Mosquito_Virus
glycoprotein__YP_009302386__Xincheng_Mosquito_Virus__1608141
Identity
- Accession:
- YP_009302386 ↗
- Protein ID:
- glycoprotein
- Kingdom:
- euk
Quality
70.8
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Xinmoviridae›
Anphevirus›
Xincheng_Mosquito_Virus
TaxID: 1608141
Cluster
View cluster (20 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 67-216
Domain cluster:
rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24664.2 best | Monjiviricetes_fusion | 56.5 | 1.90e-15 | 99.3% | 22.2% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2q7nA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 33.0 | 3.76e-01 | 94.0% | 63.6% |
| 1ex0A03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 31.0 | 3.44e-01 | 92.7% | 62.3% |
| 1m0wA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.56 | 27.0 | 3.14e-01 | 96.7% | 59.3% |
| 1el6A02 | 2.20.20.20 | Mainly Beta › Single Sheet › Anthopleurin-A › Baseplate structural protein gp11, C-terminal domain | 0.55 | 18.0 | 3.26e-01 | 72.7% | 95.7% |
| 1l9nA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 28.0 | 3.17e-01 | 94.0% | 63.2% |
| 5u8rA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 26.0 | 3.01e-01 | 72.7% | 60.2% |
| 2mcfA00 | 3.40.50.11630 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 36.0 | 3.62e-01 | 95.3% | 68.2% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3397257 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.69 | 33.0 | 3.71e-01 | 92.7% | 58.3% |
| 1503409 | 220.3.1.1 ↗ | beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Rhabdo_glycop | 0.65 | 50.0 | 5.32e-01 | 99.3% | 91.7% |
| 2464208 | 220.3.1.2 ↗ | beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 | 0.63 | 59.0 | 5.80e-01 | 100.0% | 97.5% |
| 2124211 | 220.3.1.2 ↗ | beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 | 0.63 | 59.0 | 5.78e-01 | 100.0% | 97.5% |
| 3608272 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.62 | 37.0 | 4.23e-01 | 70.7% | 77.4% |
| 185186 | 220.3.1.2 ↗ | beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 | 0.62 | 58.0 | 5.69e-01 | 99.3% | 97.5% |
| 5082586 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.62 | 31.0 | 3.43e-01 | 93.3% | 57.5% |
| 3897413 | 11.1.1.17 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Transglut_C | 0.61 | 31.0 | 3.50e-01 | 92.0% | 60.9% |
| 3257125 | 4182.1.1.2 ↗ | beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › H_lectin | 0.61 | 28.0 | 3.43e-01 | 74.7% | 65.3% |
| 2124201 | 220.3.1.2 ↗ | beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 | 0.61 | 56.0 | 5.53e-01 | 99.3% | 97.5% |
| 3707025 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.60 | 29.0 | 2.92e-01 | 78.7% | 42.6% |
| 4411709 | 11.1.1.17 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Transglut_C | 0.60 | 30.0 | 3.42e-01 | 70.7% | 61.7% |
| 3495319 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 28.0 | 3.37e-01 | 94.7% | 65.0% |
| 1688016 | 220.3.1.3 ↗ | beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Glycoprot_B_PH1 | 0.59 | 54.0 | 4.85e-01 | 100.0% | 93.8% |
| 2530507 | 220.3.1.3 ↗ | beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Glycoprot_B_PH1 | 0.59 | 53.0 | 4.69e-01 | 100.0% | 90.6% |
| 3892842 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.59 | 26.0 | 3.73e-01 | 96.7% | 92.3% |
| 3481530 | 11.2.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2-C2_1 | 0.55 | 40.0 | 3.71e-01 | 74.7% | 93.2% |
| 3733271 | 11.1.1.41 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C | 0.54 | 34.0 | 3.41e-01 | 97.3% | 60.0% |
| 3306922 | 11.1.1.60 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Vps26 | 0.54 | 36.0 | 3.50e-01 | 97.3% | 60.0% |
| 3544039 | 11.2.1.19 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF3657 | 0.53 | 46.0 | 3.59e-01 | 94.7% | 86.9% |
| 4683294 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.53 | 33.0 | 3.43e-01 | 94.0% | 65.9% |
| 3888291 | 11.2.1.19 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF3657 | 0.52 | 45.0 | 3.72e-01 | 94.7% | 90.4% |
| 5077436 | 11.1.1.41 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C | 0.51 | 30.0 | 3.25e-01 | 96.7% | 68.0% |
| 3965794 | 304.133.1.1 ↗ | a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL | 0.51 | 32.0 | 3.97e-01 | 98.7% | 100.0% |
| 3569893 | 11.2.1.50 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2_GDE1 | 0.51 | 37.0 | 3.59e-01 | 75.3% | 99.4% |
| 3517524 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 26.0 | 3.10e-01 | 93.3% | 71.6% |
D2
medium
residues 26-65_237-383
Domain cluster:
rep: glycoprotein__YP_009177723__Wuhan_tick_virus_2__1608138__D23-71_226-303_364-401
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24664.2 best | Monjiviricetes_fusion | 108.1 | 4.70e-31 | 80.2% | 22.2% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3fvcA02 | 1.20.5.1890 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.78 | 43.0 | 5.79e-01 | 98.9% | 100.0% |
| 2gumA02 | 1.20.5.1890 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.78 | 43.0 | 5.76e-01 | 100.0% | 100.0% |
| 1in0A01 | 3.30.70.860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 17.0 | 2.85e-01 | 96.3% | 61.4% |
| 3onqA02 | 3.30.70.2730 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 19.0 | 2.92e-01 | 100.0% | 63.0% |
| 2gjhA00 | 3.30.1070.20 | Alpha Beta › 2-Layer Sandwich › Cell Cycle; Chain A › | 0.57 | 17.0 | 3.11e-01 | 97.3% | 86.0% |
| 4q5eA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.56 | 19.0 | 2.96e-01 | 98.4% | 73.3% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.56 | 18.0 | 2.50e-01 | 97.3% | 53.3% |
| 2qlzA02 | 6.10.250.2960 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.56 | 26.0 | 3.95e-01 | 71.1% | 100.0% |
| 2n54B00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.53 | 16.0 | 2.59e-01 | 97.9% | 69.7% |
| 1jeyA02 | 2.40.290.10 | Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › | 0.51 | 24.0 | 2.90e-01 | 100.0% | 65.9% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3997467 | 4300.1.1.0 ↗ | beta complex topology › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like | 0.81 | 43.0 | 4.39e-01 | 100.0% | 53.0% |
| 4575751 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.62 | 18.0 | 2.65e-01 | 98.4% | 53.3% |
| 3250807 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.54 | 32.0 | 3.20e-01 | 70.1% | 54.5% |
| 3925754 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.52 | 36.0 | 4.15e-01 | 77.5% | 95.6% |
D3
medium
residues 384-454
Domain cluster:
rep: glycoprotein__YP_009666281__Drosophila_unispina_virus_1__1802951__D393-466
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24664.2 best | Monjiviricetes_fusion | 50.8 | 9.90e-14 | 85.9% | 7.8% |