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glycoprotein

Euk-Vir

Tacheng_Tick_Virus_7

glycoprotein__YP_009304475__Tacheng_Tick_Virus_7__1608089

Identity

Accession:
YP_009304475 ↗
Protein ID:
glycoprotein
Kingdom:
euk

Quality

62.9 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Gammaricinrhavirus› Tacheng_Tick_Virus_7

TaxID: 1608089

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 165-301
PDB
Domain cluster: rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3zoqC00 6.20.250.30 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.61 24.0 3.76e-01 94.9% 94.3%
6rptC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 26.0 2.90e-01 98.5% 50.9%
1vwxS02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 25.0 3.19e-01 97.1% 72.4%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2530507 220.3.1.3 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Glycoprot_B_PH1 0.71 66.0 5.53e-01 100.0% 92.4%
1688016 220.3.1.3 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Glycoprot_B_PH1 0.70 65.0 5.61e-01 100.0% 97.1%
3583154 220.3.1.0 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins 0.64 57.0 5.69e-01 100.0% 96.4%
1503409 220.3.1.1 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Rhabdo_glycop 0.61 52.0 5.35e-01 97.8% 97.0%
3892842 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.57 27.0 3.86e-01 96.4% 95.4%
2124201 220.3.1.2 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 0.56 49.0 4.71e-01 97.8% 99.4%
3576642 11.1.1.41 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.56 35.0 3.28e-01 79.6% 51.2%
3514713 11.1.1.41 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.55 33.0 3.23e-01 76.6% 53.5%
3578165 11.1.1.41 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.55 33.0 3.14e-01 76.6% 51.2%
4636309 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.53 46.0 4.06e-01 99.3% 99.5%
3846579 11.1.1.41 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.50 33.0 3.10e-01 76.6% 52.9%
D2 medium residues 109-140_516-605
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 31.0 4.42e-01 83.6% 100.0%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 27.0 3.97e-01 79.5% 100.0%
2y8tA03 2.10.70.70 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.61 23.0 3.23e-01 89.3% 69.1%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 30.0 3.70e-01 86.1% 80.0%
2qrdB01 2.20.25.290 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.58 20.0 3.32e-01 77.0% 97.3%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 27.0 3.51e-01 81.1% 81.8%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3501513 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.61 26.0 2.88e-01 80.3% 47.5%
3924975 4.1.1.377 ↗ beta barrels › SH3 › SH3 › SH3 › MSL3_chromo-like 0.60 31.0 3.72e-01 84.4% 73.8%
3505004 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.57 25.0 2.86e-01 79.5% 52.2%
4973804 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 29.0 3.57e-01 85.2% 78.7%
3506941 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.56 25.0 2.67e-01 80.3% 43.0%
4185547 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 32.0 3.74e-01 87.7% 81.2%
5029166 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 31.0 3.89e-01 81.1% 93.2%
3887822 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 34.0 3.43e-01 82.0% 60.8%
3898794 922.1.1.0 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat 0.54 19.0 3.05e-01 75.4% 100.0%
5077089 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 29.0 3.50e-01 78.7% 90.0%
3918879 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 32.0 3.06e-01 82.0% 50.7%
3271779 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 33.0 3.17e-01 81.1% 55.2%
4975478 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.51 30.0 3.54e-01 83.6% 84.7%
3411359 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 34.0 3.42e-01 81.1% 67.2%
D3 medium residues 141-164_302-392
PDB
D4 medium residues 458-515
PDB
Domain cluster: representative