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glycoprotein

Euk-Vir

Wenzhou_Crab_Virus_1

glycoprotein__YP_009304557__Wenzhou_Crab_Virus_1__1608091

Identity

Accession:
YP_009304557 ↗
Protein ID:
glycoprotein
Kingdom:
euk

Quality

62.5 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Nyamiviridae› Crustavirus› Wenzhou_Crab_Virus_1

TaxID: 1608091

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 62-193
PDB
Domain cluster: rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4aw7A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.65 27.0 2.87e-01 100.0% 42.4%
5jtwA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 28.0 3.18e-01 98.5% 53.9%
6euaA01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.62 27.0 2.65e-01 98.5% 37.4%
3zoqC00 6.20.250.30 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.59 25.0 3.76e-01 97.7% 96.2%
2n59A00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 27.0 3.07e-01 100.0% 58.4%
1vwxS02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.56 26.0 3.31e-01 98.5% 75.0%
6rptC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 27.0 2.87e-01 100.0% 51.8%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.54 23.0 3.09e-01 100.0% 74.2%
6x3aA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 28.0 3.08e-01 75.8% 62.5%
2ebfX01 3.10.670.10 Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. 0.51 31.0 2.73e-01 97.0% 40.9%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3583154 220.3.1.0 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins 0.77 71.0 7.03e-01 100.0% 97.1%
2530507 220.3.1.3 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Glycoprot_B_PH1 0.76 70.0 5.83e-01 100.0% 91.9%
2124201 220.3.1.2 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 0.72 65.0 6.13e-01 99.2% 100.0%
2124211 220.3.1.2 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 0.71 64.0 6.02e-01 99.2% 99.4%
185186 220.3.1.2 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 0.71 64.0 6.05e-01 99.2% 100.0%
1503409 220.3.1.1 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Rhabdo_glycop 0.70 63.0 6.40e-01 99.2% 98.5%
2464208 220.3.1.2 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 0.70 62.0 5.88e-01 99.2% 99.4%
3212872 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 28.0 2.98e-01 100.0% 48.7%
4960416 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 26.0 3.10e-01 98.5% 59.6%
1871008 11.1.1.237 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG4 0.58 26.0 2.94e-01 98.5% 52.9%
223776 3115.4.1.1 ↗ a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 › DUF1543 0.57 26.0 3.43e-01 98.5% 77.5%
2512518 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.56 26.0 3.00e-01 98.5% 56.4%
3390438 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 30.0 3.14e-01 77.3% 56.8%
4636309 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.53 47.0 4.06e-01 99.2% 100.0%
3220586 11.1.1.1023 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MATH 0.52 27.0 3.27e-01 100.0% 74.4%
3892842 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.52 26.0 3.41e-01 98.5% 92.3%
3280008 3115.1.1.2 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › DUF4288 0.52 33.0 3.88e-01 88.6% 93.3%
3185811 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 27.0 2.93e-01 80.3% 57.4%
3923361 11.1.1.41 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.51 35.0 3.19e-01 79.5% 52.0%
3722905 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 38.0 3.53e-01 79.5% 72.6%
3170138 11.1.1.41 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.50 36.0 3.20e-01 78.8% 51.1%
D2 medium residues 41-61_195-249
PDB
Domain cluster: rep: putative_glycoprotein__YP_002905338__Nyavirus_nyamaniniense__644610__D53-68_204-260
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gumB03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.76 65.0 5.48e-01 92.1% 90.1%
4osnA00 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.72 63.0 5.54e-01 96.1% 98.2%
1mkeA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 57.0 4.67e-01 97.4% 77.1%
2p0hA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 57.0 4.92e-01 96.1% 89.0%
1btkA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 54.0 4.30e-01 94.7% 69.4%
5j3tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 56.0 4.78e-01 100.0% 73.8%
1v5mA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 53.0 4.38e-01 92.1% 74.3%
2crfA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 53.0 4.60e-01 96.1% 81.6%
4akmB00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.61 51.0 4.08e-01 93.4% 79.0%
1z87A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 50.0 4.64e-01 92.1% 86.0%
2oqbA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 51.0 4.66e-01 97.4% 84.3%
3mb5A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.61 44.0 4.72e-01 93.4% 95.2%
2as9B01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 41.0 3.79e-01 89.5% 53.5%
2i9uA01 2.30.40.10 Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 0.57 39.0 3.48e-01 71.1% 100.0%
4wz9A01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.57 39.0 2.88e-01 72.4% 81.8%
1w4tA02 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.55 45.0 4.19e-01 93.4% 100.0%
4ksnA00 6.20.250.80 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.55 41.0 4.43e-01 90.8% 92.3%
2m9uA00 2.30.30.850 Mainly Beta › Roll › SH3 type barrels. › 0.54 46.0 4.40e-01 96.1% 93.3%
2q9kA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 45.0 3.66e-01 93.4% 78.2%
6iomB01 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.52 34.0 3.41e-01 86.8% 66.2%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3715264 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.75 65.0 5.54e-01 94.7% 83.3%
3934695 220.4.1.0 ↗ beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins 0.73 67.0 6.17e-01 100.0% 92.6%
3574509 220.4.1.0 ↗ beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins 0.72 63.0 6.40e-01 94.7% 98.7%
3222614 220.1.1.158 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.68 58.0 5.04e-01 93.4% 80.9%
3247329 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.67 55.0 4.93e-01 92.1% 76.4%
3223154 220.1.1.176 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7778 0.66 59.0 4.83e-01 100.0% 80.0%
3925159 220.4.1.0 ↗ beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins 0.66 57.0 5.59e-01 92.1% 97.5%
3992986 220.4.1.0 ↗ beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins 0.66 55.0 5.57e-01 90.8% 100.0%
978 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.66 57.0 4.70e-01 97.4% 65.2%
3231836 220.1.1.176 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7778 0.66 58.0 4.67e-01 100.0% 77.3%
3220796 220.1.1.158 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.65 54.0 4.41e-01 93.4% 61.3%
3991097 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 56.0 4.82e-01 97.4% 82.4%
3530263 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 56.0 4.71e-01 96.1% 73.8%
3449130 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 57.0 4.53e-01 98.7% 80.6%
3940444 220.4.1.0 ↗ beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins 0.65 54.0 5.00e-01 89.5% 78.9%
3899590 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 55.0 4.42e-01 96.1% 63.2%
3898198 220.1.1.184 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_S11IP 0.64 55.0 4.72e-01 96.1% 80.0%
3306218 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.64 55.0 4.65e-01 98.7% 82.2%
3413910 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.64 55.0 4.57e-01 96.1% 68.9%
3512614 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 53.0 4.65e-01 92.1% 80.9%
3763418 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 53.0 5.07e-01 94.7% 86.7%
3738978 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 55.0 4.57e-01 98.7% 76.4%
936 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 53.0 4.38e-01 92.1% 74.3%
3478042 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 55.0 4.79e-01 100.0% 90.0%
3228158 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.63 55.0 4.53e-01 100.0% 72.4%
3597310 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 54.0 4.56e-01 97.4% 76.2%
3932501 220.4.1.0 ↗ beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins 0.63 55.0 4.55e-01 94.7% 63.8%
3890869 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.62 52.0 4.08e-01 97.4% 53.3%
3899275 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.62 53.0 4.43e-01 96.1% 68.9%
3924833 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 53.0 4.62e-01 97.4% 68.3%
3991461 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 49.0 4.54e-01 85.5% 100.0%
3705153 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 52.0 4.38e-01 96.1% 76.3%
3843359 4.1.1.246 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_Coilin 0.62 50.0 4.83e-01 93.4% 78.8%
4938399 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.61 53.0 4.73e-01 98.7% 88.2%
3928500 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 51.0 4.36e-01 97.4% 77.0%
3739007 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 50.0 4.19e-01 93.4% 70.0%
3873394 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.61 51.0 4.15e-01 97.4% 61.3%
3718961 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 52.0 4.10e-01 96.1% 55.6%
2755606 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.60 49.0 3.52e-01 92.1% 45.2%
3899494 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 50.0 4.28e-01 100.0% 85.4%
3819714 11.2.1.8 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PTEN_C2 0.58 47.0 3.81e-01 90.8% 98.7%
4607576 4.1.1.370 ↗ beta barrels › SH3 › SH3 › SH3 › PF28261 0.57 45.0 4.67e-01 93.4% 92.9%
4024274 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.57 47.0 4.23e-01 93.4% 65.7%
5057532 101.1.2.893 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF2226 0.56 39.0 2.66e-01 94.7% 19.8%
3709449 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 47.0 3.11e-01 94.7% 27.5%
4457262 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.53 46.0 4.12e-01 97.4% 97.3%
5029166 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 43.0 4.42e-01 93.4% 93.2%
4428238 1.1.8.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_CAF17_C 0.51 41.0 3.59e-01 92.1% 96.8%
D3 medium residues 330-421
PDB