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glycoprotein

Euk-Vir

Wuhan_Louse_Fly_Virus_5

glycoprotein__YP_009305101__Wuhan_Louse_Fly_Virus_5__1608119

Identity

Accession:
YP_009305101 ↗
Protein ID:
glycoprotein
Kingdom:
euk

Quality

73.7 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Ledantevirus› Wuhan_Louse_Fly_Virus_5

TaxID: 1608119

Cluster

View cluster (70 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 37-63_298-438
PDB
Domain cluster: rep: glycoprotein__YP_010086563__Kwatta_virus__1272945__D21-47_334-461
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24833.2 best Rhabdo_glycop_CD 91.5 6.00e-26 76.8% 89.3%
D2 high residues 88-203
PDB
Domain cluster: rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00974.25 best Rhabdo_glycop_FD 108.6 3.10e-31 86.2% 100.0%
D3 medium residues 70-87_212-294
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4d6wA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.79 70.0 7.28e-01 97.0% 100.0%
2cmzA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.79 68.0 7.12e-01 97.0% 98.9%
3a58A01 2.30.29.90 Mainly Beta › Roll › PH-domain like › 0.71 60.0 5.04e-01 92.1% 71.3%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.66 54.0 4.88e-01 87.1% 77.9%
1tj6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 51.0 4.92e-01 89.1% 94.8%
2dx0A00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.62 34.0 3.25e-01 98.0% 44.4%
5vmzA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.59 24.0 3.43e-01 94.1% 89.7%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 48.0 4.34e-01 90.1% 92.1%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 47.0 4.35e-01 90.1% 77.6%
1jmxA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.57 43.0 4.20e-01 80.2% 94.5%
1yw5A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.55 29.0 3.38e-01 84.2% 74.6%
2gumB03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.55 47.0 4.52e-01 97.0% 100.0%
3stjA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 30.0 3.25e-01 89.1% 65.9%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.51 30.0 3.41e-01 77.2% 77.9%
2avwD01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.50 39.0 3.48e-01 82.2% 89.4%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3913945 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.73 60.0 5.56e-01 89.1% 90.6%
3235806 220.1.1.27 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD 0.72 62.0 5.39e-01 92.1% 96.0%
3541772 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.68 57.0 5.22e-01 90.1% 87.7%
3867284 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.67 55.0 3.49e-01 90.1% 21.3%
4162382 220.1.1.71 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Inp1 0.66 56.0 5.22e-01 92.1% 96.8%
3605584 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 52.0 4.75e-01 89.1% 86.7%
3388895 220.1.1.170 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_alsin 0.62 49.0 4.84e-01 89.1% 79.1%
4964214 375.8.1.1 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.58 27.0 3.46e-01 89.1% 76.4%
3581817 4.1.1.287 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5641 0.56 33.0 3.88e-01 75.2% 87.7%
5026901 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 31.0 3.76e-01 95.0% 90.0%
3312712 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.54 26.0 3.39e-01 95.0% 88.0%
3351355 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.54 22.0 2.95e-01 83.2% 65.5%
3559960 2006.1.6.66 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF4537 0.52 30.0 3.46e-01 78.2% 80.0%