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glycoprotein

Euk-Vir

Wuhan_Louse_Fly_Virus_9

glycoprotein__YP_009305106__Wuhan_Louse_Fly_Virus_9__1608123

Identity

Accession:
YP_009305106 ↗
Protein ID:
glycoprotein
Kingdom:
euk

Quality

71.8 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Sigmavirus› Wuhan_Louse_Fly_Virus_9

TaxID: 1608123

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-41_291-410
PDB
Domain cluster: rep: glycoprotein__YP_010086563__Kwatta_virus__1272945__D21-47_334-461
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24833.2 best Rhabdo_glycop_CD 52.0 1.10e-13 75.2% 65.3%
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4d6wA01 2.30.30.640 Mainly Beta › Roll › SH3 type barrels. › Rhabdovirus spike glycoprotein G, lateral domain 0.78 48.0 6.04e-01 95.2% 97.8%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4803436 4300.1.1.15 ↗ beta complex topology › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like › Rhabdo_glycop_CD 0.80 38.0 5.16e-01 75.9% 85.0%
D2 high residues 70-184
PDB
Domain cluster: rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00974.25 best Rhabdo_glycop_FD 106.0 2.10e-30 86.1% 98.0%
D3 medium residues 42-69_191-290
PDB
Domain cluster: rep: glycoprotein__YP_009305101__Wuhan_Louse_Fly_Virus_5__1608119__D70-87_212-294
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4d6wA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.80 58.0 6.69e-01 83.6% 100.0%
2cmzA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.76 54.0 6.19e-01 87.5% 100.0%
3a58A01 2.30.29.90 Mainly Beta › Roll › PH-domain like › 0.65 52.0 4.66e-01 84.4% 78.7%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 48.0 4.77e-01 83.6% 81.3%
2dhjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 45.0 4.63e-01 78.1% 88.0%
2gumB03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.56 45.0 4.66e-01 85.2% 100.0%
7qi3A01 3.30.2140.20 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › 0.52 47.0 3.52e-01 100.0% 69.7%
2ky6A00 2.40.290.30 Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › Mediator complex subunit 25, ACID domain 0.50 40.0 3.73e-01 85.9% 90.4%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3306218 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.70 54.0 5.34e-01 81.2% 94.8%
4001931 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 53.0 5.21e-01 83.6% 83.7%
3787626 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.66 51.0 5.41e-01 82.8% 100.0%
3892517 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 52.0 5.15e-01 85.2% 89.6%
3619357 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 49.0 4.64e-01 81.2% 85.2%
3256095 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.63 48.0 5.18e-01 79.7% 98.2%
3788228 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.63 50.0 4.93e-01 84.4% 90.4%
3475126 220.1.1.35 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IQ_SEC7_PH 0.62 50.0 4.54e-01 84.4% 74.7%
3881564 220.1.1.32 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Sec3-PIP2_bind 0.62 50.0 4.43e-01 84.4% 88.3%
3275991 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 46.0 4.53e-01 76.6% 77.0%
3243417 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 46.0 4.65e-01 78.1% 87.7%
3564421 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 45.0 4.78e-01 76.6% 91.3%
3567195 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 48.0 4.34e-01 82.8% 61.7%
3227023 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 43.0 3.81e-01 80.5% 56.8%