glycoprotein

Euk-Vir

Yongjia_Tick_Virus_2

glycoprotein__YP_009305121__Yongjia_Tick_Virus_2__1608146

Identity

73.4 mean pLDDT

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Ledantevirus› Yongjia_Tick_Virus_2

TaxID: 1608146

View cluster (70 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-50_310-426

PDB

Domain cluster: rep: glycoprotein__YP_009666837__Vaprio_virus__2100727__D50-66_371-471

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF24833.2 best	Rhabdo_glycop_CD	83.5	1.80e-23	81.8%	76.0%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4d6wA01	2.30.30.640	Mainly Beta › Roll › SH3 type barrels. › Rhabdovirus spike glycoprotein G, lateral domain	0.82	50.0	6.26e-01	90.9%	96.7%

D2 high residues 56-70_198-293

PDB

Domain cluster: rep: glycoprotein__YP_009305101__Wuhan_Louse_Fly_Virus_5__1608119__D70-87_212-294

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4d6wA03	2.30.29.130	Mainly Beta › Roll › PH-domain like ›	0.77	63.0	6.83e-01	93.7%	100.0%
2cmzA03	2.30.29.130	Mainly Beta › Roll › PH-domain like ›	0.76	62.0	6.74e-01	93.7%	100.0%
3d9wA02	2.40.128.150	Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases	0.62	45.0	4.74e-01	75.7%	100.0%
4gs3A00	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.60	36.0	3.98e-01	87.4%	74.4%
3fzxA00	2.40.360.20	Mainly Beta › Beta Barrel › YmcC-like fold ›	0.57	36.0	2.97e-01	100.0%	34.0%
1jmxA02	2.40.128.120	Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2	0.56	40.0	4.10e-01	74.8%	95.4%
6nvxB02	2.30.120.10	Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region	0.55	30.0	3.46e-01	90.1%	72.7%
1pcfA00	2.30.31.10	Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A	0.54	27.0	3.50e-01	79.3%	83.3%
2gtlM02	2.40.128.620	Mainly Beta › Beta Barrel › Lipocalin ›	0.52	39.0	3.39e-01	77.5%	71.7%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3689291	220.1.1.69 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › Meiotic_rec114	0.66	54.0	4.83e-01	88.3%	93.5%
4938400	220.1.1.219 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch	0.64	51.0	5.03e-01	84.7%	93.9%
152653	2.1.1.6 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB	0.60	36.0	3.98e-01	87.4%	74.4%
4159881	220.1.1.197 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › PF28623	0.58	46.0	4.93e-01	85.6%	100.0%
3573769	220.1.1.0 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like	0.55	45.0	3.94e-01	86.5%	85.6%
3974170	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.50	36.0	3.81e-01	74.8%	97.0%
3488366	5.1.1.0 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed	0.50	37.0	3.35e-01	77.5%	69.0%
3802472	5.1.3.144 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like	0.50	39.0	2.84e-01	89.2%	29.8%

D3 high residues 74-196

PDB

Domain cluster: rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00974.25 best	Rhabdo_glycop_FD	125.0	2.40e-36	81.3%	99.0%