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glycoprotein

Euk-Vir

Gata_virus

glycoprotein__YP_009315879__Gata_virus__1911435

Identity

Accession:
YP_009315879 ↗
Protein ID:
glycoprotein
Kingdom:
euk

Quality

72.1 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Alphapaprhavirus› Gata_virus

TaxID: 1911435

Cluster

View cluster (70 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 64-149_166-181
PDB
Domain cluster: rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00974.25 best Rhabdo_glycop_FD 86.7 2.10e-24 87.2% 84.7%
D2 medium residues 150-165_183-271
PDB
Domain cluster: rep: glycoprotein__YP_009305101__Wuhan_Louse_Fly_Virus_5__1608119__D70-87_212-294
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4d6wA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.75 57.0 5.95e-01 80.0% 87.4%
2ra9A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.59 40.0 4.60e-01 72.4% 100.0%
5u78C00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 40.0 3.91e-01 71.4% 85.3%
2dn6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 39.0 3.80e-01 71.4% 71.3%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 34.0 4.00e-01 90.5% 95.5%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3752179 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.53 45.0 4.19e-01 93.3% 78.5%
D3 medium residues 304-427
PDB
Domain cluster: rep: glycoprotein__YP_009362185__Joinjakaka_virus__1272943__D408-534
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24833.2 best Rhabdo_glycop_CD 32.8 9.60e-08 78.2% 66.1%
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 37.0 3.69e-01 76.6% 79.9%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5060461 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 31.0 3.82e-01 75.0% 90.7%
3797728 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 31.0 3.67e-01 73.4% 81.2%
4099964 325.1.7.3 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.53 29.0 3.82e-01 75.0% 100.0%
3520640 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 38.0 3.35e-01 77.4% 87.6%
4127839 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.51 27.0 3.28e-01 80.6% 78.7%
4183857 325.1.7.30 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Peptidase_M23 0.51 27.0 3.25e-01 77.4% 78.7%
3268089 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 38.0 3.87e-01 78.2% 91.2%
4595815 325.1.7.3 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.51 28.0 3.67e-01 75.0% 100.0%
5048050 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 38.0 2.92e-01 80.6% 44.2%