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glycoprotein
Euk-VirSena_Madureira_virus
glycoprotein__YP_009362108__Sena_Madureira_virus__1272957
Identity
- Accession:
- YP_009362108 ↗
- Protein ID:
- glycoprotein
- Kingdom:
- euk
Quality
74.3
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Rhabdoviridae›
Sripuvirus›
Sena_Madureira_virus
TaxID: 1272957
Cluster
View cluster (70 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 19-50_278-415
Domain cluster:
rep: glycoprotein__YP_010086563__Kwatta_virus__1272945__D21-47_334-461
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24833.2 best | Rhabdo_glycop_CD | 78.8 | 5.30e-22 | 74.7% | 86.8% |
D2
high
residues 69-194
Domain cluster:
rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00974.25 best | Rhabdo_glycop_FD | 113.7 | 8.00e-33 | 79.4% | 99.0% |
D3
high
residues 197-264
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2cmzA03 | 2.30.29.130 | Mainly Beta › Roll › PH-domain like › | 0.78 | 71.0 | 6.37e-01 | 100.0% | 75.3% |
| 4d6wA03 | 2.30.29.130 | Mainly Beta › Roll › PH-domain like › | 0.76 | 68.0 | 6.08e-01 | 100.0% | 74.7% |
| 3c12A01 | 2.30.30.910 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 34.0 | 3.76e-01 | 89.7% | 70.6% |
| 3d89A00 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.60 | 44.0 | 3.54e-01 | 79.4% | 64.7% |
| 2ra9A02 | 2.30.270.10 | Mainly Beta › Roll › duf1285 protein fold › duf1285 protein | 0.59 | 50.0 | 4.96e-01 | 100.0% | 98.6% |
| 1f2uB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 37.0 | 2.95e-01 | 80.9% | 31.0% |
| 2lt1A00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.56 | 41.0 | 4.02e-01 | 80.9% | 89.3% |
| 5wb2B00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.55 | 40.0 | 3.96e-01 | 100.0% | 74.0% |
| 1eqtA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.54 | 40.0 | 4.02e-01 | 100.0% | 80.6% |
| 2ljwA00 | 3.30.428.40 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › Protein of unknown function DUF3067 | 0.52 | 35.0 | 3.12e-01 | 70.6% | 91.3% |
| 4hcsA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 40.0 | 4.09e-01 | 100.0% | 89.6% |
| 6i18A04 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.51 | 39.0 | 3.43e-01 | 85.3% | 80.4% |
| 2mp1A00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 37.0 | 3.67e-01 | 100.0% | 72.7% |
| 1vx7200 | 3.30.390.110 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.50 | 34.0 | 3.08e-01 | 94.1% | 47.1% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2417924 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.62 | 39.0 | 3.61e-01 | 94.1% | 50.6% |
| 4110878 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 37.0 | 4.35e-01 | 88.2% | 91.1% |
| 3388362 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.61 | 42.0 | 2.42e-01 | 72.1% | 7.7% |
| 4547406 | 4.1.1.32 ↗ | beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID | 0.61 | 42.0 | 4.06e-01 | 73.5% | 68.8% |
| 3230533 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 33.0 | 3.84e-01 | 86.8% | 77.8% |
| 5012425 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.60 | 42.0 | 3.32e-01 | 73.5% | 77.9% |
| 3260945 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 36.0 | 3.83e-01 | 82.4% | 68.3% |
| 4339993 | 4.1.1.32 ↗ | beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID | 0.58 | 42.0 | 3.84e-01 | 76.5% | 62.2% |
| 3910652 | 66.1.1.3 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain › Sol_Rieske_ferrdox | 0.56 | 42.0 | 3.64e-01 | 80.9% | 70.9% |
| 5014724 | 295.1.1.51 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › FtsQ_DivIB_C | 0.56 | 42.0 | 3.80e-01 | 83.8% | 89.0% |
| 4335575 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.56 | 38.0 | 2.14e-01 | 72.1% | 6.6% |
| 5017637 | 4.1.1.458 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF2098 | 0.54 | 38.0 | 4.09e-01 | 85.3% | 90.9% |
| 4051081 | 4.1.1.32 ↗ | beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID | 0.54 | 38.0 | 4.00e-01 | 75.0% | 86.7% |
| 4030565 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.54 | 37.0 | 2.43e-01 | 72.1% | 28.1% |
| 3913372 | 5.1.4.242 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PEP5_VPS11_N | 0.54 | 37.0 | 2.41e-01 | 72.1% | 25.1% |
| 4049910 | 375.14.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | 0.52 | 30.0 | 3.45e-01 | 88.2% | 86.7% |