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glycoprotein
Euk-VirLa_Joya_virus
glycoprotein__YP_009362175__La_Joya_virus__1272946
Identity
- Accession:
- YP_009362175 ↗
- Protein ID:
- glycoprotein
- Kingdom:
- euk
Quality
69.2
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Rhabdoviridae›
Hapavirus›
La_Joya_virus
TaxID: 1272946
Cluster
View cluster (14 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 57-80_338-486
Domain cluster:
rep: glycoprotein__YP_009362185__Joinjakaka_virus__1272943__D408-534
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24833.2 best | Rhabdo_glycop_CD | 39.1 | 1.10e-09 | 80.3% | 66.1% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4d6wA01 | 2.30.30.640 | Mainly Beta › Roll › SH3 type barrels. › Rhabdovirus spike glycoprotein G, lateral domain | 0.78 | 42.0 | 5.71e-01 | 89.6% | 98.9% |
| 3waiA02 | 2.60.40.3390 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 25.0 | 3.32e-01 | 85.0% | 74.2% |
| 1y6kR02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 21.0 | 2.74e-01 | 83.2% | 62.1% |
| 2h41A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 22.0 | 2.93e-01 | 83.8% | 70.5% |
| 8afoA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 21.0 | 2.85e-01 | 83.8% | 70.5% |
| 2yjlA00 | 2.60.40.2990 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 28.0 | 3.41e-01 | 91.9% | 83.3% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4673268 | 3115.1.1.8 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Usg | 0.66 | 25.0 | 4.23e-01 | 79.2% | 100.0% |
| 3266198 | 6109.1.1.1 ↗ | a+b two layers › N-terminal domain of chitin biosynthesis protein CHS6 › N-terminal domain of chitin biosynthesis protein CHS6 › N-terminal domain of chitin biosynthesis protein CHS6 › ChAPs | 0.56 | 43.0 | 4.26e-01 | 87.3% | 75.6% |
| 4960811 | 11.14.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domains in STT3 › Ig-like domains in STT3 › AglB_L1 | 0.53 | 25.0 | 3.29e-01 | 82.7% | 78.9% |
D2
high
residues 141-229
Domain cluster:
rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00974.25 best | Rhabdo_glycop_FD | 58.2 | 1.60e-15 | 76.4% | 67.3% |
D3
medium
residues 81-105_233-337
Domain cluster:
rep: glycoprotein__YP_009305101__Wuhan_Louse_Fly_Virus_5__1608119__D70-87_212-294
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4d6wA03 | 2.30.29.130 | Mainly Beta › Roll › PH-domain like › | 0.77 | 55.0 | 6.30e-01 | 75.4% | 100.0% |
| 2cmzA03 | 2.30.29.130 | Mainly Beta › Roll › PH-domain like › | 0.73 | 51.0 | 5.86e-01 | 76.2% | 98.9% |
| 1btkA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.61 | 45.0 | 4.21e-01 | 76.9% | 94.4% |
| 1x05A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.61 | 43.0 | 4.39e-01 | 73.1% | 93.8% |
| 1plsA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.61 | 43.0 | 4.55e-01 | 72.3% | 89.4% |
| 4iapA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.59 | 41.0 | 4.74e-01 | 72.3% | 100.0% |
| 2dhjA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.59 | 41.0 | 4.23e-01 | 71.5% | 88.0% |
| 3f5rA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.59 | 43.0 | 4.60e-01 | 75.4% | 94.7% |
| 1bakA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.59 | 40.0 | 4.20e-01 | 70.0% | 79.0% |
| 2crfA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.59 | 40.0 | 4.16e-01 | 70.8% | 89.6% |
| 4tyzA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.58 | 43.0 | 4.65e-01 | 76.2% | 94.5% |
| 1q67A01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.58 | 41.0 | 4.08e-01 | 73.8% | 99.3% |
| 2ec1A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.57 | 40.0 | 4.23e-01 | 73.1% | 96.6% |
| 3wyfE00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 42.0 | 4.09e-01 | 77.7% | 75.4% |
| 2lydA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 39.0 | 3.94e-01 | 73.8% | 86.6% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3992398 | 220.1.1.44 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › POB3_N | 0.64 | 44.0 | 4.68e-01 | 70.0% | 100.0% |
| 3930311 | 220.1.1.176 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7778 | 0.63 | 47.0 | 4.85e-01 | 76.9% | 98.3% |
| 3259097 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.62 | 46.0 | 4.69e-01 | 76.9% | 94.4% |
| 3919311 | 220.1.1.66 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH | 0.61 | 44.0 | 4.54e-01 | 74.6% | 96.8% |
| 3578602 | 535.1.1.0 ↗ | alpha arrays › BEACH domain › BEACH domain › BEACH domain | 0.61 | 49.0 | 4.35e-01 | 86.2% | 85.3% |
| 3470912 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.61 | 43.0 | 4.52e-01 | 73.8% | 100.0% |
| 3178261 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.61 | 42.0 | 4.32e-01 | 70.8% | 84.0% |
| 3274553 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.61 | 43.0 | 4.69e-01 | 72.3% | 95.2% |
| 3596312 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.61 | 43.0 | 4.37e-01 | 73.8% | 83.1% |
| 3401930 | 220.1.1.125 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_PLEKHM2 | 0.60 | 44.0 | 4.34e-01 | 76.2% | 89.3% |
| 3740122 | 220.1.1.92 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Mcp5_PH | 0.60 | 41.0 | 4.14e-01 | 70.0% | 83.5% |
| 3390227 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.60 | 42.0 | 4.62e-01 | 73.1% | 97.1% |
| 3849761 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.60 | 43.0 | 3.20e-01 | 73.8% | 48.9% |
| 3710624 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.60 | 44.0 | 4.12e-01 | 77.7% | 93.9% |
| 3891317 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.59 | 44.0 | 4.39e-01 | 77.7% | 88.1% |
| 3275324 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.59 | 43.0 | 4.26e-01 | 74.6% | 85.2% |
| 3349450 | 220.1.1.19 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle | 0.59 | 41.0 | 4.30e-01 | 71.5% | 80.0% |
| 3882494 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.59 | 41.0 | 4.40e-01 | 73.1% | 87.0% |
| 3407758 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.58 | 42.0 | 4.40e-01 | 73.8% | 90.4% |
| 3899370 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.57 | 42.0 | 4.39e-01 | 76.9% | 87.5% |
| 3991351 | 220.1.1.4 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 | 0.57 | 42.0 | 4.09e-01 | 76.9% | 79.3% |
| 2167707 | 220.1.1.13 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 | 0.57 | 41.0 | 3.73e-01 | 74.6% | 88.8% |
| 3741041 | 220.1.1.4 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 | 0.57 | 42.0 | 4.07e-01 | 76.9% | 86.0% |
| 3388895 | 220.1.1.170 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_alsin | 0.56 | 41.0 | 4.42e-01 | 76.9% | 92.7% |
| 5047735 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 40.0 | 3.89e-01 | 75.4% | 72.5% |
| 5071919 | 220.1.1.320 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Zn_Ribbon_1 | 0.55 | 40.0 | 3.99e-01 | 76.2% | 75.0% |
| 3497957 | 220.1.1.4 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 | 0.55 | 41.0 | 3.84e-01 | 77.7% | 72.7% |
| 3597380 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 38.0 | 3.92e-01 | 70.8% | 96.7% |
| 4024501 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 38.0 | 4.12e-01 | 72.3% | 97.1% |