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glycoprotein
Euk-VirNkolbisson_virus
glycoprotein__YP_009362193__Nkolbisson_virus__380442
Identity
- Accession:
- YP_009362193 ↗
- Protein ID:
- glycoprotein
- Kingdom:
- euk
Quality
73.6
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Rhabdoviridae›
Ledantevirus›
Nkolbisson_virus
TaxID: 380442
Cluster
View cluster (70 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 28-55_299-437
Domain cluster:
rep: glycoprotein__YP_009666837__Vaprio_virus__2100727__D50-66_371-471
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24833.2 best | Rhabdo_glycop_CD | 97.1 | 1.10e-27 | 75.4% | 86.0% |
D2
high
residues 61-75_203-284
Domain cluster:
rep: glycoprotein__YP_009305101__Wuhan_Louse_Fly_Virus_5__1608119__D70-87_212-294
D3
medium
residues 82-138
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00974.25 best | Rhabdo_glycop_FD | 64.2 | 2.10e-17 | 100.0% | 53.1% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1se8A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.61 | 50.0 | 4.10e-01 | 94.7% | 50.5% |
| 1p1hB01 | 3.30.2360.10 | Alpha Beta › 2-Layer Sandwich › Glyceraldehyde-3-phosphate dehydrogenase-like fold › Glyceraldehyde-3-phosphate dehydrogenase-like domain | 0.57 | 46.0 | 3.32e-01 | 93.0% | 91.5% |
| 2z5bB01 | 3.30.230.90 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.57 | 39.0 | 3.08e-01 | 93.0% | 34.5% |
| 2v1yA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.56 | 32.0 | 2.75e-01 | 82.5% | 37.1% |
| 3ihlB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 39.0 | 2.72e-01 | 82.5% | 38.0% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1503409 | 220.3.1.1 ↗ | beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Rhabdo_glycop | 0.84 | 75.0 | 5.70e-01 | 100.0% | 43.2% |
| 3606812 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.64 | 43.0 | 2.51e-01 | 70.2% | 8.3% |
| 4241225 | 304.102.1.6 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 | 0.63 | 44.0 | 2.76e-01 | 71.9% | 74.4% |
| 3639274 | 261.1.1.1 ↗ | a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › HECT | 0.62 | 44.0 | 2.59e-01 | 75.4% | 11.2% |
| 3258060 | 4357.1.1.0 ↗ | beta barrels › WWE domain › WWE domain › WWE domain | 0.61 | 48.0 | 4.57e-01 | 89.5% | 91.4% |
| 3479321 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.57 | 39.0 | 2.39e-01 | 73.7% | 94.3% |
| 4452393 | 304.112.1.10 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain › Med13_N | 0.56 | 42.0 | 3.42e-01 | 98.2% | 43.8% |
| 4983447 | 3457.1.1.3 ↗ | alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Arc_PepC_II | 0.56 | 45.0 | 2.99e-01 | 94.7% | 75.8% |
| 3786528 | 109.4.1.87 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec6 | 0.55 | 40.0 | 2.26e-01 | 82.5% | 18.4% |
| 4160831 | 109.4.1.1255 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 | 0.55 | 37.0 | 2.13e-01 | 71.9% | 25.0% |
| 4134015 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.54 | 42.0 | 3.32e-01 | 98.2% | 59.4% |
| 3303720 | 3336.1.1.1 ↗ | alpha complex topology › plant-specific ROP nucleotide exchanger (PRONE) domain › plant-specific ROP nucleotide exchanger (PRONE) domain › plant-specific ROP nucleotide exchanger (PRONE) domain › PRONE | 0.53 | 41.0 | 2.50e-01 | 84.2% | 60.0% |
| 4958814 | 3457.1.1.3 ↗ | alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Arc_PepC_II | 0.52 | 39.0 | 2.66e-01 | 86.0% | 50.4% |
| 3649881 | 67.1.1.1 ↗ | beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ_C | 0.52 | 37.0 | 3.37e-01 | 78.9% | 83.5% |
| 4093401 | 4187.2.1.1 ↗ | a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 › NAGPA | 0.52 | 38.0 | 3.19e-01 | 77.2% | 89.5% |
| 3832498 | 4967.1.1.6 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2 | 0.52 | 36.0 | 2.56e-01 | 75.4% | 75.8% |
| 4303869 | 218.1.1.8 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA | 0.51 | 34.0 | 3.03e-01 | 93.0% | 44.4% |
| 3818469 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.50 | 44.0 | 3.33e-01 | 94.7% | 87.2% |
| 3239560 | 209.1.1.14 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › PF29411 | 0.50 | 34.0 | 2.42e-01 | 73.7% | 63.7% |
D4
medium
residues 139-198
Domain cluster:
rep: G__YP_009177013__Kumasi_rhabdovirus__1537975__D127-138_167-215
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00974.25 best | Rhabdo_glycop_FD | 38.8 | 1.80e-09 | 68.3% | 41.8% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1503409 | 220.3.1.1 ↗ | beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Rhabdo_glycop | 0.86 | 80.0 | 6.03e-01 | 100.0% | 81.1% |
| 4824866 | 220.3.1.6 ↗ | beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › PH_Rhabdo_glycop | 0.85 | 67.0 | 6.83e-01 | 85.0% | 96.6% |
| 4878938 | 220.3.1.5 ↗ | beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Rhabdo_glycop_FD, PH_Rhabdo_glycop | 0.81 | 58.0 | 6.31e-01 | 76.7% | 91.8% |
| 4832828 | 220.3.1.5 ↗ | beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Rhabdo_glycop_FD, PH_Rhabdo_glycop | 0.78 | 58.0 | 5.33e-01 | 78.3% | 88.2% |
| 4030046 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 46.0 | 4.50e-01 | 83.3% | 95.4% |