←Back to structures
glycoprotein
Euk-VirMount_Elgon_bat_virus
glycoprotein__YP_009362242__Mount_Elgon_bat_virus__380434
Identity
- Accession:
- YP_009362242 ↗
- Protein ID:
- glycoprotein
- Kingdom:
- euk
Quality
79.5
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Rhabdoviridae›
Ledantevirus›
Mount_Elgon_bat_virus
TaxID: 380434
Cluster
View cluster (70 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 26-54_274-340
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24833.2 best | Rhabdo_glycop_CD | 61.7 | 1.10e-16 | 74.0% | 57.0% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4d6wB02 | 6.10.140.740 | Special › Helix non-globular › Helix Hairpins › | 0.82 | 57.0 | 5.87e-01 | 71.9% | 75.0% |
| 4rm7A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.63 | 48.0 | 4.31e-01 | 83.3% | 92.8% |
| 3t9oB00 | 1.20.120.30 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartate receptor, ligand-binding domain | 0.55 | 40.0 | 3.72e-01 | 75.0% | 70.0% |
| 2cr7A01 | 1.20.1160.11 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix | 0.55 | 34.0 | 4.00e-01 | 76.0% | 93.7% |
| 3ah5B00 | 3.30.1360.170 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.53 | 43.0 | 3.34e-01 | 86.5% | 57.5% |
| 2gumA02 | 1.20.5.1890 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.52 | 44.0 | 4.32e-01 | 91.7% | 92.1% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3974204 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.63 | 46.0 | 4.27e-01 | 76.0% | 70.0% |
| 4371068 | 601.1.1.101 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › FKS1_dom2 | 0.62 | 45.0 | 4.24e-01 | 77.1% | 88.3% |
| 3178573 | 192.29.1.129 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › PigN | 0.60 | 52.0 | 3.37e-01 | 96.9% | 42.5% |
| 3785333 | 5001.1.1.64 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › PalH | 0.59 | 51.0 | 3.72e-01 | 93.8% | 83.8% |
| 3252688 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.56 | 47.0 | 3.98e-01 | 91.7% | 79.4% |
| 4200315 | 604.6.1.59 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › PigN | 0.54 | 44.0 | 3.94e-01 | 87.5% | 88.9% |
| 137202 | 258.1.1.1 ↗ | a+b complex topology › Methionine synthase activation domain-like › Methionine synthase activation domain-like › Methionine synthase activation domain-like › Met_synt_B12 | 0.54 | 41.0 | 2.79e-01 | 79.2% | 71.1% |
| 3848548 | 109.29.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Chloroplast inner membrane protein TIC110 › Chloroplast inner membrane protein TIC110 › PLU-1 | 0.53 | 39.0 | 3.82e-01 | 78.1% | 82.9% |
D2
medium
residues 55-77_195-249
Domain cluster:
rep: glycoprotein__YP_009305101__Wuhan_Louse_Fly_Virus_5__1608119__D70-87_212-294
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4d6wA03 | 2.30.29.130 | Mainly Beta › Roll › PH-domain like › | 0.80 | 66.0 | 6.14e-01 | 98.7% | 71.6% |
| 2cmzA03 | 2.30.29.130 | Mainly Beta › Roll › PH-domain like › | 0.80 | 68.0 | 6.35e-01 | 100.0% | 75.3% |
| 1b9lA00 | 3.30.1130.10 | Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain | 0.58 | 40.0 | 3.53e-01 | 73.1% | 95.0% |
| 2dhjA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.57 | 50.0 | 4.32e-01 | 98.7% | 69.6% |
| 3a8pB01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.57 | 51.0 | 4.45e-01 | 98.7% | 73.3% |
| 3gxwC00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.57 | 39.0 | 3.62e-01 | 96.2% | 55.0% |
| 2d4rA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.54 | 46.0 | 3.71e-01 | 92.3% | 63.0% |
| 3cp2A02 | 2.40.30.260 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.54 | 37.0 | 3.48e-01 | 71.8% | 61.6% |
| 1yc9A02 | 2.20.200.10 | Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.54 | 38.0 | 3.80e-01 | 75.6% | 96.4% |
| 4dq2A03 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 31.0 | 3.66e-01 | 88.5% | 93.6% |
| 4h63Q04 | 3.90.1150.120 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.53 | 37.0 | 3.30e-01 | 87.2% | 49.1% |
| 7wa9A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 44.0 | 3.62e-01 | 92.3% | 61.0% |
| 1rvkA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.51 | 36.0 | 3.25e-01 | 75.6% | 90.5% |
| 2zadA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.51 | 36.0 | 3.25e-01 | 75.6% | 90.4% |
| 3ijlA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.51 | 36.0 | 3.31e-01 | 75.6% | 92.6% |
| 3dg6A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.50 | 36.0 | 3.20e-01 | 75.6% | 91.2% |
| 2pgwA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.50 | 41.0 | 3.35e-01 | 91.0% | 96.7% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3247407 | 220.1.1.50 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_17 | 0.66 | 59.0 | 5.03e-01 | 100.0% | 72.0% |
| None | — | 0.61 | 49.0 | 3.81e-01 | 87.2% | 65.1% | |
| 3511200 | 389.1.2.0 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain | 0.61 | 41.0 | 4.00e-01 | 98.7% | 63.5% |
| 4422555 | 213.1.1.85 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1, Acetyltransf_13 | 0.60 | 51.0 | 3.80e-01 | 94.9% | 70.2% |
| 3398379 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.58 | 50.0 | 4.44e-01 | 100.0% | 71.7% |
| 3895845 | 6.1.1.3 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › IL1 | 0.58 | 52.0 | 4.35e-01 | 100.0% | 94.8% |
| 3391867 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.58 | 50.0 | 4.28e-01 | 100.0% | 65.2% |
| 3563672 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.58 | 49.0 | 4.16e-01 | 100.0% | 82.9% |
| 3786298 | 213.1.1.34 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_13 | 0.55 | 48.0 | 3.63e-01 | 98.7% | 88.0% |
| 3393797 | 219.1.1.118 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core, CEPT76_peptidase | 0.54 | 46.0 | 3.26e-01 | 94.9% | 46.9% |
| 3191175 | 7579.1.1.3 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 | 0.54 | 47.0 | 3.16e-01 | 100.0% | 54.7% |
| 3841524 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.52 | 37.0 | 3.30e-01 | 92.3% | 52.7% |
| 1174516 | 218.1.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N | 0.52 | 37.0 | 3.23e-01 | 75.6% | 95.8% |
| 3776390 | 4.1.1.91 ↗ | beta barrels › SH3 › SH3 › SH3 › hSH3 | 0.51 | 37.0 | 3.22e-01 | 92.3% | 50.4% |
| 3869833 | 109.4.1.3457 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HPS3_N, HPS3_C | 0.51 | 39.0 | 2.89e-01 | 85.9% | 79.1% |
| 5056883 | 218.1.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N | 0.51 | 35.0 | 3.14e-01 | 71.8% | 100.0% |
| 4506585 | 222.1.1.12 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH | 0.50 | 37.0 | 2.95e-01 | 76.9% | 92.3% |
| 4945201 | 218.1.1.11 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_C | 0.50 | 36.0 | 3.15e-01 | 75.6% | 95.0% |
D3
medium
residues 78-194
Domain cluster:
rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00974.25 best | Rhabdo_glycop_FD | 100.6 | 1.00e-28 | 82.0% | 95.9% |