glycoprotein

Euk-Vir

Klamath_virus

glycoprotein__YP_009362264__Klamath_virus__909206

Identity

76.9 mean pLDDT

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Tupavirus› Klamath_virus

TaxID: 909206

View cluster (70 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-51_307-448

PDB

Domain cluster: rep: glycoprotein__YP_010086563__Kwatta_virus__1272945__D21-47_334-461

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF24833.2 best	Rhabdo_glycop_CD	58.7	9.00e-16	70.2%	78.5%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4d6wA01	2.30.30.640	Mainly Beta › Roll › SH3 type barrels. › Rhabdovirus spike glycoprotein G, lateral domain	0.86	46.0	6.37e-01	89.5%	98.9%
4d6wB02	6.10.140.740	Special › Helix non-globular › Helix Hairpins ›	0.65	30.0	4.15e-01	84.2%	83.7%
1y96D00	2.30.30.100	Mainly Beta › Roll › SH3 type barrels. ›	0.52	25.0	3.41e-01	80.7%	90.4%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4971294	1.1.7.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C	0.54	20.0	3.09e-01	83.0%	81.4%

D2 medium residues 55-77_202-305

PDB

Domain cluster: rep: glycoprotein__YP_009305101__Wuhan_Louse_Fly_Virus_5__1608119__D70-87_212-294

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4d6wA03	2.30.29.130	Mainly Beta › Roll › PH-domain like ›	0.85	62.0	7.11e-01	95.3%	100.0%
2cmzA03	2.30.29.130	Mainly Beta › Roll › PH-domain like ›	0.80	57.0	6.65e-01	95.3%	100.0%
3npfB01	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.58	29.0	3.69e-01	88.2%	86.4%
1w4tA02	2.40.128.150	Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases	0.58	40.0	4.47e-01	70.9%	100.0%
3a8pB01	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.54	41.0	4.29e-01	88.2%	87.1%
5nfiB02	2.60.40.2090	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.52	36.0	3.55e-01	95.3%	65.4%
3gxwC00	3.30.505.10	Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain	0.52	27.0	3.00e-01	97.6%	60.0%
2dhjA00	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.51	41.0	4.16e-01	89.0%	86.4%
2v1rA00	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.51	27.0	3.67e-01	70.9%	100.0%
1khcA01	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.51	25.0	3.24e-01	70.1%	86.2%
1v5mA00	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.50	41.0	4.10e-01	89.0%	84.6%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3254982	295.1.1.4 ↗	a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain	0.58	23.0	3.00e-01	95.3%	61.4%
3263955	220.1.1.1 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › PH	0.57	44.0	4.45e-01	89.0%	79.8%
3650882	220.1.1.0 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like	0.54	43.0	4.49e-01	85.0%	97.4%
4121982	868.1.1.5 ↗	a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med18	0.53	41.0	3.42e-01	83.5%	60.4%
4283621	1.1.7.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C	0.52	33.0	3.75e-01	76.4%	83.5%
3626691	4.1.1.9 ↗	beta barrels › SH3 › SH3 › SH3 › TUDOR	0.51	27.0	2.99e-01	76.4%	61.0%
3612244	220.1.1.0 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like	0.51	42.0	4.28e-01	89.0%	94.4%
None	—		0.51	41.0	3.89e-01	89.0%	72.0%
3560443	220.1.1.120 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › GARIL_Rab2_bd	0.50	41.0	3.84e-01	89.8%	81.8%
3576437	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.50	26.0	2.92e-01	76.4%	60.0%

D3 medium residues 78-200

PDB

Domain cluster: rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00974.25 best	Rhabdo_glycop_FD	88.9	4.20e-25	77.2%	94.9%