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glycoprotein

Euk-Vir

Colocasia_bobone_disease-associated_virus

glycoprotein__YP_009362279__Colocasia_bobone_disease-associated_virus__1775456

Identity

Accession:
YP_009362279 ↗
Protein ID:
glycoprotein
Kingdom:
euk

Quality

60.0 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Betacytorhabdovirus› Colocasia_bobone_disease-associated_virus

TaxID: 1775456

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 55-65_197-251
PDB
D2 high residues 70-189
PDB
Domain cluster: rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4njcA00 3.10.20.730 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like 0.59 24.0 3.19e-01 100.0% 68.3%
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.58 25.0 3.22e-01 100.0% 68.7%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1503409 220.3.1.1 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Rhabdo_glycop 0.73 65.0 6.36e-01 100.0% 89.4%
3583154 220.3.1.0 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins 0.71 65.0 6.18e-01 100.0% 90.7%
1688016 220.3.1.3 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Glycoprot_B_PH1 0.71 65.0 5.39e-01 100.0% 92.8%
2530507 220.3.1.3 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Glycoprot_B_PH1 0.69 64.0 5.14e-01 100.0% 88.3%
2124201 220.3.1.2 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 0.63 56.0 5.18e-01 100.0% 97.5%
185186 220.3.1.2 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 0.61 54.0 4.99e-01 100.0% 96.8%
2124211 220.3.1.2 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 0.60 54.0 4.92e-01 100.0% 95.0%
5050550 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 36.0 3.61e-01 70.8% 59.2%
2464208 220.3.1.2 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 0.59 53.0 4.82e-01 100.0% 95.0%
3737793 11.1.1.41 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.57 40.0 3.43e-01 70.8% 57.8%
3192002 11.1.1.41 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.57 40.0 3.31e-01 70.8% 59.5%
3197303 11.1.1.41 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.57 40.0 3.21e-01 71.7% 63.0%
3697761 11.1.1.41 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.57 40.0 3.18e-01 70.8% 64.0%
None — 0.53 37.0 3.09e-01 71.7% 54.5%
3927415 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 31.0 3.37e-01 95.0% 69.2%
5077592 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 35.0 3.51e-01 70.0% 68.0%
3389304 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.51 30.0 3.23e-01 83.3% 63.8%
D3 medium residues 262-321
PDB
D4 medium residues 322-409
PDB