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glycoprotein

Euk-Vir

Culex_rhabdo-like_virus

glycoprotein__YP_009388615__Culex_rhabdo-like_virus__2010277

Identity

Accession:
YP_009388615 ↗
Protein ID:
glycoprotein
Kingdom:
euk

Quality

73.1 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Ohlsrhavirus› Culex_rhabdo-like_virus

TaxID: 2010277

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 30-56_290-436
PDB
Domain cluster: rep: glycoprotein__YP_010086563__Kwatta_virus__1272945__D21-47_334-461
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24833.2 best Rhabdo_glycop_CD 76.6 2.50e-21 70.1% 91.7%
D2 high residues 79-205
PDB
Domain cluster: rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00974.25 best Rhabdo_glycop_FD 91.5 6.90e-26 78.7% 99.0%
D3 high residues 211-275
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4d6wA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.71 64.0 5.60e-01 100.0% 71.6%
2cmzA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.64 57.0 5.09e-01 100.0% 71.0%
2auwA01 3.30.2020.10 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › NE0471-like N-terminal domain 0.60 41.0 3.91e-01 73.8% 85.4%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.58 32.0 3.19e-01 78.5% 49.3%
2ljwA00 3.30.428.40 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › Protein of unknown function DUF3067 0.57 40.0 3.46e-01 75.4% 93.3%
2ra9A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.56 46.0 4.55e-01 100.0% 93.2%
4hwmA00 2.40.128.500 Mainly Beta › Beta Barrel › Lipocalin › YedD-like protein 0.56 48.0 3.96e-01 95.4% 70.1%
4dsdA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.56 35.0 2.91e-01 80.0% 33.3%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 40.0 3.98e-01 100.0% 74.2%
1d8cA02 2.170.170.11 Mainly Beta › Beta Complex › Malate synthase G - maily-beta sub-domain › Malate synthase G - maily-beta sub-domain 0.55 43.0 3.61e-01 92.3% 82.0%
2vseA04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 44.0 3.53e-01 93.8% 90.2%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 34.0 3.41e-01 100.0% 60.9%
6i18A04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 43.0 3.79e-01 93.8% 97.2%
6e20A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 42.0 3.39e-01 89.2% 82.6%
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 31.0 3.05e-01 73.8% 50.7%
4gp3A03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 43.0 3.61e-01 95.4% 91.8%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 33.0 3.44e-01 96.9% 72.4%
4tvcA01 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.51 41.0 2.97e-01 87.7% 47.9%
6k34A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 36.0 2.32e-01 73.8% 24.6%
3a0oA03 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.51 36.0 2.46e-01 76.9% 58.4%
1w0pA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 39.0 2.99e-01 89.2% 76.3%
1ej6B00 3.90.1830.10 Alpha Beta › Alpha-Beta Complex › Inner capsid protein lambda-1 › Inner capsid protein lambda-1 0.50 39.0 2.16e-01 87.7% 79.3%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5056777 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 39.0 3.68e-01 81.5% 48.8%
3303901 3468.1.1.0 ↗ a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain 0.64 44.0 3.28e-01 70.8% 91.2%
3441677 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 39.0 4.28e-01 90.8% 88.0%
2417924 1021.1.1.0 ↗ a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.58 40.0 3.66e-01 98.5% 54.1%
4881251 4064.1.1.7 ↗ a+b complex topology › Inner layer core protein p3-related › Inner layer core protein p3-related › Inner layer core protein p3-related › Lamba1_VP3 0.58 41.0 2.32e-01 100.0% 6.2%
3721965 220.1.1.74 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H 0.58 48.0 4.09e-01 98.5% 74.8%
2831878 2.1.1.9 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.56 33.0 3.44e-01 73.8% 62.1%
3572103 220.1.1.74 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H 0.56 47.0 3.83e-01 100.0% 82.2%
3805766 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.56 40.0 4.22e-01 78.5% 90.9%
3741960 5.1.4.242 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PEP5_VPS11_N 0.55 39.0 2.56e-01 76.9% 29.4%
3230533 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 34.0 3.84e-01 76.9% 88.9%
3411213 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 45.0 3.67e-01 98.5% 65.7%
5012906 2498.2.1.6 ↗ mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain › S_layer_C 0.55 38.0 2.73e-01 73.8% 62.8%
4938243 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.54 38.0 3.92e-01 76.9% 80.0%
4133709 2004.1.1.19 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.54 40.0 2.83e-01 81.5% 25.4%
3940607 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.54 37.0 3.90e-01 98.5% 81.4%
4257154 220.1.1.126 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 0.53 42.0 3.79e-01 100.0% 86.1%
3979962 9.1.1.69 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › BigA_N 0.52 40.0 3.75e-01 86.2% 74.1%
3584738 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 37.0 2.73e-01 78.5% 53.3%
3265166 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 31.0 3.40e-01 98.5% 76.0%
4544724 243.6.1.9 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 0.51 35.0 3.42e-01 80.0% 64.0%
3995719 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.51 36.0 3.51e-01 96.9% 68.6%
3945997 309.1.2.0 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain 0.51 42.0 3.46e-01 93.8% 72.6%
4061263 239.3.1.1 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin 0.51 40.0 3.14e-01 96.9% 82.3%
3524423 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.51 30.0 3.15e-01 72.3% 63.6%
5017637 4.1.1.458 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2098 0.50 36.0 3.87e-01 89.2% 92.7%