glycoprotein

Euk-Vir

Piry_virus

glycoprotein__YP_009505535__Piry_virus__11274

Identity

77.5 mean pLDDT

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Vesiculovirus› Piry_virus

TaxID: 11274

View cluster (70 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 74-192

PDB

Domain cluster: rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00974.25 best	Rhabdo_glycop_FD	119.4	1.30e-34	82.3%	98.0%

D2 medium residues 19-36_321-439

PDB

Domain cluster: rep: glycoprotein__YP_010087312__Muir_Springs_virus__932700__D321-442

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF24833.2 best	Rhabdo_glycop_CD	69.6	3.80e-19	55.5%	60.3%

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4d6wA01	2.30.30.640	Mainly Beta › Roll › SH3 type barrels. › Rhabdovirus spike glycoprotein G, lateral domain	0.93	62.0	7.62e-01	74.5%	100.0%
2xk0A00	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.63	26.0	3.54e-01	81.8%	73.9%
3h8zA02	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.61	24.0	3.34e-01	75.9%	73.4%
4ii1A02	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.59	23.0	3.45e-01	78.1%	85.7%
4m4zA01	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.56	22.0	3.43e-01	72.3%	100.0%
3fb9B00	2.30.30.100	Mainly Beta › Roll › SH3 type barrels. ›	0.56	26.0	3.28e-01	78.8%	71.4%
2hbpA00	2.30.30.700	Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1	0.54	28.0	3.66e-01	88.3%	100.0%
1jegA00	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.52	25.0	3.52e-01	75.9%	100.0%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4422251	4.1.1.98 ↗	beta barrels › SH3 › SH3 › SH3 › ProQ_C	0.67	24.0	3.82e-01	73.7%	86.0%
4191690	4.1.1.98 ↗	beta barrels › SH3 › SH3 › SH3 › ProQ_C	0.64	24.0	3.51e-01	75.2%	75.9%
4321173	4.1.1.98 ↗	beta barrels › SH3 › SH3 › SH3 › ProQ_C	0.64	25.0	3.61e-01	78.1%	79.3%
4084190	4.1.1.98 ↗	beta barrels › SH3 › SH3 › SH3 › ProQ_C	0.64	24.0	3.48e-01	75.2%	74.6%
5033600	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.62	22.0	3.47e-01	70.1%	83.7%
3673317	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.61	24.0	3.62e-01	75.9%	87.3%
3326980	4.1.1.33 ↗	beta barrels › SH3 › SH3 › SH3 › Myosin_N	0.60	24.0	3.42e-01	78.1%	78.3%
3550644	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.58	24.0	3.51e-01	78.1%	90.9%
3514556	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.57	24.0	3.29e-01	75.9%	75.7%
3852545	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.56	24.0	3.40e-01	78.1%	85.0%
4069560	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.56	27.0	3.46e-01	75.9%	80.0%
3649741	4.1.1.33 ↗	beta barrels › SH3 › SH3 › SH3 › Myosin_N	0.56	23.0	2.96e-01	78.1%	62.7%
3222210	4.1.1.54 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_2	0.56	26.0	3.44e-01	78.1%	82.9%
3554026	4.1.1.233 ↗	beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N	0.54	25.0	3.37e-01	75.9%	91.7%

D3 medium residues 37-53_212-238_282-320

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1rsgA01	3.50.50.60	Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain	0.52	43.0	3.08e-01	90.4%	99.2%
2gumA02	1.20.5.1890	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.51	41.0	3.82e-01	96.4%	69.3%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3700547	109.4.1.22 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N	0.61	50.0	3.00e-01	91.6%	41.8%
3179147	376.1.6.1 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR	0.54	44.0	4.36e-01	86.7%	90.6%

D4 medium residues 54-73_193-211_239-281

PDB

Domain cluster: representative

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4d6wA03	2.30.29.130	Mainly Beta › Roll › PH-domain like ›	0.80	73.0	6.90e-01	96.3%	100.0%
3mpxA02	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.58	46.0	4.40e-01	86.6%	90.7%
4njcA00	3.10.20.730	Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like	0.54	33.0	3.74e-01	73.2%	85.0%
2m6pA00	2.20.28.270	Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase-binding protein A	0.54	31.0	3.71e-01	87.8%	100.0%
3h41A02	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.53	35.0	3.81e-01	85.4%	83.8%
2zaiA04	2.60.40.3030	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.52	38.0	3.28e-01	78.0%	63.6%
3npfA02	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.50	33.0	3.57e-01	81.7%	80.0%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4001931	220.1.1.0 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like	0.59	47.0	3.98e-01	86.6%	77.0%
3237594	220.1.1.1 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › PH	0.58	46.0	3.94e-01	86.6%	88.8%
3575472	220.1.1.0 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like	0.52	36.0	3.36e-01	73.2%	98.2%