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glycoprotein
Euk-VirRyukyu_mammarenavirus
glycoprotein__YP_009508471__Ryukyu_mammarenavirus__2169995
Identity
- Accession:
- YP_009508471 ↗
- Protein ID:
- glycoprotein
- Kingdom:
- euk
Quality
60.9
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Bunyaviricetes›
Hareavirales›
Arenaviridae›
Mammarenavirus›
Mammarenavirus_ryukyuense
TaxID: 2169995
Cluster
View cluster (22 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 81-258
Domain cluster:
rep: glycoprotein_precursor__YP_001816782__Chapare_mammarenavirus__499556__D79-239
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00798.24 best | Arena_glycoprot | 245.8 | 1.10e-72 | 100.0% | 36.6% |
D2
medium
residues 450-496
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00798.24 best | Arena_glycoprot | 72.7 | 3.60e-20 | 87.2% | 8.5% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2l0zA00 | 2.20.28.180 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › Arenavirus glycoprotein, zinc binding domain | 0.80 | 59.0 | 6.21e-01 | 80.9% | 92.7% |