←Back to structures

glycoprotein

Euk-Vir

Merida_virus

glycoprotein__YP_009552114__Merida_virus__1803034

Identity

Accession:: YP_009552114 ↗
Protein ID:: glycoprotein
Kingdom:: euk

Quality

71.1 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Merhavirus› Merida_virus

TaxID: 1803034

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 26-51_306-423

PDB

Domain cluster: rep: glycoprotein__YP_010086563__Kwatta_virus__1272945__D21-47_334-461

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF24833.2 best	Rhabdo_glycop_CD	55.3	9.70e-15	75.0%	76.0%

D2 high residues 63-73_203-287

PDB

Domain cluster: rep: glycoprotein__YP_009305101__Wuhan_Louse_Fly_Virus_5__1608119__D70-87_212-294

D3 high residues 77-199

PDB

Domain cluster: rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00974.25 best	Rhabdo_glycop_FD	72.4	6.10e-20	81.3%	99.0%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2dx0B01	3.30.505.10	Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain	0.56	25.0	3.07e-01	91.1%	64.0%
2qsdA01	3.10.20.10	Alpha Beta › Roll › Ubiquitin-like (UB roll) ›	0.53	26.0	3.26e-01	100.0%	79.1%
1vwxS02	3.10.20.10	Alpha Beta › Roll › Ubiquitin-like (UB roll) ›	0.53	26.0	3.11e-01	100.0%	69.7%
1xe0C00	2.60.120.340	Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain	0.53	25.0	2.79e-01	99.2%	52.5%
1vwxS01	3.10.20.10	Alpha Beta › Roll › Ubiquitin-like (UB roll) ›	0.53	28.0	3.42e-01	100.0%	84.5%
4a18X01	3.10.20.10	Alpha Beta › Roll › Ubiquitin-like (UB roll) ›	0.51	26.0	3.08e-01	100.0%	72.2%
6julA02	3.30.1490.100	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain	0.51	27.0	3.06e-01	93.5%	66.7%

ECOD (15)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1503409	220.3.1.1 ↗	beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Rhabdo_glycop	0.85	79.0	7.75e-01	99.2%	97.0%
2530507	220.3.1.3 ↗	beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Glycoprot_B_PH1	0.72	66.0	5.36e-01	100.0%	90.6%
1688016	220.3.1.3 ↗	beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Glycoprot_B_PH1	0.70	65.0	5.40e-01	100.0%	94.7%
185186	220.3.1.2 ↗	beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64	0.66	59.0	5.46e-01	99.2%	99.4%
3508212	3115.1.1.6 ↗	a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494	0.66	33.0	4.26e-01	100.0%	84.3%
2124211	220.3.1.2 ↗	beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64	0.64	57.0	5.25e-01	99.2%	98.8%
2464208	220.3.1.2 ↗	beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64	0.63	56.0	5.20e-01	99.2%	98.1%
5010503	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.62	34.0	3.78e-01	100.0%	67.4%
4648475	3115.1.1.0 ↗	a+b two layers › GP2-like › RplX-like › RplX-like	0.58	29.0	3.94e-01	100.0%	96.7%
4990637	3115.1.1.1 ↗	a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A	0.58	28.0	3.29e-01	100.0%	65.1%
3517068	3115.1.1.6 ↗	a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494	0.57	29.0	3.76e-01	100.0%	90.8%
3405278	382.1.1.3 ↗	few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Activin_recp	0.54	29.0	3.23e-01	100.0%	63.0%
3722905	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.51	38.0	3.38e-01	77.2%	69.7%
3578165	11.1.1.41 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C	0.51	33.0	3.03e-01	77.2%	50.6%
3280008	3115.1.1.2 ↗	a+b two layers › GP2-like › RplX-like › RplX-like › DUF4288	0.50	34.0	3.90e-01	87.8%	94.4%