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glycoprotein

Euk-Vir

Zahedan_rhabdovirus

glycoprotein__YP_009552804__Zahedan_rhabdovirus__1620507

Identity

Accession:
YP_009552804 ↗
Protein ID:
glycoprotein
Kingdom:
euk

Quality

71.1 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Zarhavirus› Zahedan_rhabdovirus

TaxID: 1620507

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-47_276-407
PDB
Domain cluster: rep: glycoprotein__YP_010086563__Kwatta_virus__1272945__D21-47_334-461
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24833.2 best Rhabdo_glycop_CD 65.3 7.90e-18 78.7% 85.1%
D2 high residues 56-68_197-268
PDB
Domain cluster: rep: glycoprotein__YP_009305101__Wuhan_Louse_Fly_Virus_5__1608119__D70-87_212-294
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4d6wA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.85 79.0 7.64e-01 100.0% 97.9%
2cmzA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.81 75.0 7.28e-01 100.0% 97.8%
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.72 62.0 5.51e-01 96.5% 100.0%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.69 56.0 5.34e-01 88.2% 95.0%
2d9xA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 56.0 5.16e-01 92.9% 88.2%
4chmB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 55.0 4.89e-01 91.8% 85.5%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 55.0 5.14e-01 92.9% 100.0%
2kcjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 58.0 5.37e-01 96.5% 94.4%
3fssA01 2.30.29.120 Mainly Beta › Roll › PH-domain like › 0.66 56.0 4.83e-01 95.3% 97.8%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.65 54.0 4.10e-01 92.9% 58.7%
4qxaB00 2.30.29.230 Mainly Beta › Roll › PH-domain like › 0.64 54.0 4.56e-01 95.3% 95.9%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 38.0 4.11e-01 83.5% 75.7%
2lfuA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.61 48.0 4.22e-01 85.9% 83.7%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 50.0 4.34e-01 92.9% 76.9%
2cduA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.60 49.0 4.44e-01 88.2% 79.6%
2z4hA01 2.40.128.300 Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain 0.59 38.0 3.94e-01 95.3% 69.6%
1nhpA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.59 48.0 4.36e-01 88.2% 79.6%
4fx9A03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.59 48.0 4.38e-01 89.4% 79.6%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 32.0 4.04e-01 82.4% 95.7%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 48.0 4.14e-01 92.9% 97.1%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 35.0 4.06e-01 92.9% 88.1%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.57 47.0 4.45e-01 92.9% 98.1%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.57 36.0 4.17e-01 87.1% 94.7%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 37.0 4.03e-01 92.9% 86.4%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 34.0 3.93e-01 91.8% 89.7%
5c94A00 2.40.10.250 Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 0.56 36.0 3.30e-01 91.8% 48.3%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 34.0 3.63e-01 92.9% 70.7%
2o62A01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 40.0 3.58e-01 83.5% 87.0%
3k1lA01 3.30.457.40 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.53 38.0 3.79e-01 77.6% 73.9%
4g2sA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.53 45.0 4.22e-01 94.1% 81.1%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.53 45.0 3.31e-01 98.8% 56.1%
5vmzA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.53 25.0 3.11e-01 71.8% 84.6%
3cnwA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 39.0 3.31e-01 80.0% 74.5%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 33.0 3.68e-01 90.6% 87.5%
4hwmA00 2.40.128.500 Mainly Beta › Beta Barrel › Lipocalin › YedD-like protein 0.51 39.0 3.51e-01 82.4% 77.8%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 34.0 3.41e-01 83.5% 68.6%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3237220 220.1.1.84 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_15 0.72 60.0 5.40e-01 90.6% 92.2%
3877687 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.70 59.0 5.10e-01 91.8% 85.4%
3555102 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.69 58.0 5.21e-01 91.8% 94.2%
3538619 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.69 58.0 5.08e-01 94.1% 82.3%
3861569 220.1.1.56 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ASK_PH 0.68 57.0 5.16e-01 92.9% 85.2%
3712932 220.1.1.263 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_29 0.67 56.0 4.63e-01 92.9% 63.2%
4582465 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.66 55.0 5.10e-01 91.8% 96.4%
3521698 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.66 55.0 4.92e-01 91.8% 88.3%
3222570 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 55.0 5.00e-01 91.8% 91.3%
3487437 220.1.1.46 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_14 0.65 53.0 4.54e-01 92.9% 89.7%
3865654 220.1.1.52 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.64 53.0 4.71e-01 89.4% 85.8%
3782145 220.1.1.86 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.64 50.0 4.88e-01 83.5% 85.3%
3591998 220.1.1.11 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.64 53.0 4.93e-01 92.9% 97.3%
3929257 220.4.1.0 ↗ beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins 0.64 49.0 5.08e-01 85.9% 100.0%
3479384 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 53.0 4.01e-01 94.1% 60.5%
3936038 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.62 49.0 4.47e-01 85.9% 88.5%
3890418 220.1.1.38 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.61 51.0 4.83e-01 92.9% 99.0%
3911252 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 51.0 4.91e-01 91.8% 92.6%
3231177 4.1.1.333 ↗ beta barrels › SH3 › SH3 › SH3 › PF29330 0.61 34.0 4.17e-01 83.5% 92.0%
3241817 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 36.0 4.13e-01 83.5% 83.3%
3621818 4.1.1.333 ↗ beta barrels › SH3 › SH3 › SH3 › PF29330 0.60 34.0 4.12e-01 83.5% 92.0%
3926852 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 51.0 4.45e-01 100.0% 97.9%
3622389 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 34.0 3.81e-01 83.5% 73.8%
3259583 220.1.1.86 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.59 46.0 4.70e-01 84.7% 90.0%
3533318 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.59 33.0 4.00e-01 82.4% 92.0%
3372822 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 35.0 3.74e-01 92.9% 68.0%
3441677 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 35.0 4.17e-01 82.4% 100.0%
3929260 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 34.0 4.05e-01 83.5% 90.9%
3554995 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 35.0 3.78e-01 92.9% 72.9%
4134876 4.1.1.334 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1, SH3_2 0.57 35.0 2.84e-01 92.9% 30.9%
3464886 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.57 35.0 3.96e-01 83.5% 86.7%
3936726 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 34.0 3.94e-01 83.5% 90.9%
3457163 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.56 35.0 3.64e-01 83.5% 66.3%
4178260 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.56 42.0 4.24e-01 81.2% 100.0%
3907870 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.56 34.0 3.57e-01 92.9% 64.6%
3593607 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 35.0 4.04e-01 83.5% 96.4%
4126797 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.56 37.0 4.11e-01 91.8% 95.0%
3510676 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 33.0 3.21e-01 83.5% 51.6%
3094740 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.56 45.0 3.85e-01 89.4% 85.0%
3601598 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 44.0 4.01e-01 92.9% 82.5%
2561577 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.52 32.0 3.67e-01 82.4% 85.2%
3670800 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.52 46.0 3.51e-01 97.6% 55.5%
4567929 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.52 45.0 2.95e-01 95.3% 24.9%
3269422 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.52 37.0 2.68e-01 77.6% 23.7%
3373583 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.52 35.0 3.80e-01 82.4% 85.7%
3868320 4.1.1.65 ↗ beta barrels › SH3 › SH3 › SH3 › 53-BP1_Tudor 0.51 35.0 3.94e-01 94.1% 93.8%
3502710 6.1.1.4 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Ricin_B_lectin 0.51 40.0 3.36e-01 84.7% 90.6%
3243143 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 34.0 3.78e-01 83.5% 89.2%
3168829 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.51 42.0 2.84e-01 92.9% 29.9%
D3 high residues 73-188
PDB
Domain cluster: rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00974.25 best Rhabdo_glycop_FD 104.2 7.20e-30 86.2% 100.0%