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glycoprotein

Euk-Vir

Caligus_rogercresseyi_rhabdovirus

glycoprotein__YP_009666515__Caligus_rogercresseyi_rhabdovirus__1921414

Identity

Accession:
YP_009666515 ↗
Protein ID:
glycoprotein
Kingdom:
euk

Quality

70.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 89-101_229-296
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4chmB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.71 64.0 5.55e-01 100.0% 83.1%
4d6wA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.69 61.0 5.83e-01 100.0% 91.6%
7t8tA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 59.0 5.07e-01 100.0% 82.4%
4iapA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 59.0 5.66e-01 100.0% 97.8%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 57.0 5.39e-01 97.5% 94.0%
2rrfA00 2.30.29.160 Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal 0.66 59.0 4.93e-01 100.0% 76.6%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 56.0 5.56e-01 97.5% 96.6%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.65 57.0 4.30e-01 100.0% 54.9%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 55.0 4.76e-01 100.0% 76.1%
3au4A04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 54.0 5.24e-01 98.8% 90.3%
2kuqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 55.0 4.51e-01 100.0% 57.5%
1v5pA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 53.0 4.94e-01 100.0% 100.0%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 36.0 4.24e-01 88.9% 100.0%
2ra9A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.59 47.0 4.89e-01 90.1% 98.6%
2d0bA01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.57 39.0 3.79e-01 86.4% 64.0%
2vz8A04 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.57 43.0 3.05e-01 80.2% 78.0%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 38.0 4.04e-01 98.8% 85.3%
1vwxM01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 35.0 3.51e-01 90.1% 61.2%
6c1zA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 46.0 3.89e-01 92.6% 91.3%
2nykA02 2.60.40.2530 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 38.0 3.77e-01 72.8% 98.9%
1ealA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 46.0 4.03e-01 95.1% 96.1%
2psbA00 3.50.90.10 Alpha Beta › 3-Layer(bba) Sandwich › YerB-like fold › YerB-like 0.54 41.0 2.93e-01 85.2% 85.2%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 39.0 3.42e-01 80.2% 70.6%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.52 43.0 3.76e-01 97.5% 84.8%
2qc5A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 43.0 2.88e-01 100.0% 24.2%
1r0uA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 42.0 3.62e-01 92.6% 94.4%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.51 43.0 4.20e-01 95.1% 96.7%
6g6qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 38.0 3.16e-01 81.5% 76.4%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4322675 220.1.1.121 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SLA1 0.70 64.0 5.72e-01 100.0% 77.3%
3591822 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 62.0 5.37e-01 100.0% 88.8%
3804236 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 63.0 5.20e-01 100.0% 71.4%
3257304 220.1.1.2 beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.68 59.0 5.46e-01 100.0% 95.2%
3557698 220.1.1.122 beta barrels › PH domain-like › PH domain-like › PH domain-like › C2_SHIP1-2_first 0.67 60.0 5.59e-01 100.0% 91.0%
3496475 220.1.1.13 beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.67 58.0 4.91e-01 100.0% 73.6%
3909439 220.1.1.40 beta barrels › PH domain-like › PH domain-like › PH domain-like › OCRL_clath_bd 0.66 58.0 5.22e-01 100.0% 96.5%
3508939 220.1.1.13 beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.66 58.0 5.00e-01 100.0% 77.7%
5081361 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 57.0 5.36e-01 97.5% 88.0%
3734376 220.1.1.33 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_8 0.66 58.0 5.28e-01 100.0% 84.5%
4940485 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.64 58.0 5.02e-01 100.0% 92.0%
3388895 220.1.1.170 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_alsin 0.62 54.0 4.94e-01 100.0% 79.1%
3276072 220.1.1.7 beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.62 54.0 4.97e-01 98.8% 81.9%
3498575 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.61 53.0 5.00e-01 100.0% 84.0%
3436556 220.1.1.86 beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.61 50.0 5.20e-01 95.1% 96.0%
3259583 220.1.1.86 beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.61 50.0 5.06e-01 93.8% 90.0%
3979962 9.1.1.69 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › BigA_N 0.60 47.0 4.67e-01 84.0% 82.4%
3729173 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.60 46.0 3.10e-01 81.5% 81.7%
3596626 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 40.0 3.68e-01 74.1% 91.3%
3256431 4.1.1.360 beta barrels › SH3 › SH3 › SH3 › KOW, G-patch_2 0.58 34.0 3.45e-01 82.7% 58.7%
3917645 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 49.0 4.34e-01 95.1% 84.2%
3593811 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 47.0 4.14e-01 92.6% 97.6%
3731812 3794.1.1.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.56 44.0 3.63e-01 87.7% 64.4%
3502290 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 36.0 4.05e-01 91.4% 88.3%
3404988 3794.1.1.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.56 44.0 3.73e-01 91.4% 51.1%
4954762 241.1.1.0 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.56 44.0 3.80e-01 85.2% 72.0%
3469279 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 35.0 3.61e-01 85.2% 68.0%
None 0.55 44.0 3.00e-01 100.0% 25.1%
3267345 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.55 35.0 3.98e-01 88.9% 92.7%
3256023 4026.1.1.0 a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.55 46.0 3.89e-01 91.4% 58.5%
3243787 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 46.0 4.50e-01 96.3% 97.8%
3627951 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 45.0 4.35e-01 97.5% 93.7%
3592926 719.1.1.0 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.53 35.0 3.39e-01 87.7% 58.9%
1677788 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.53 47.0 4.64e-01 98.8% 90.9%
3369217 3459.1.1.3 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 0.52 42.0 3.82e-01 90.1% 81.7%
5043213 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.52 44.0 3.35e-01 95.1% 85.5%
3506182 5.1.5.85 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40_RFWD3 0.52 46.0 3.02e-01 100.0% 23.1%
3671596 5.1.5.68 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › RAB3GAP2_N 0.52 47.0 2.97e-01 100.0% 24.9%
3520914 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.52 43.0 2.47e-01 92.6% 10.6%
2095 4976.1.1.1 beta sandwiches › C-terminal domain in YerB-like proteins › C-terminal domain in YerB-like proteins › C-terminal domain in YerB-like proteins › DUF3048_C 0.51 42.0 3.66e-01 92.6% 97.7%
3421657 5.1.10.3 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › DUF295 0.51 39.0 3.84e-01 81.5% 94.1%
3923314 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.51 43.0 2.98e-01 88.9% 31.4%
185415 3459.1.1.1 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › FAIM1 0.51 43.0 4.20e-01 95.1% 96.7%
5021185 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.51 44.0 3.52e-01 98.8% 64.0%
3425089 5.1.3.65 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.50 40.0 2.82e-01 91.4% 65.1%
D2 high residues 102-221
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00974.25 best Rhabdo_glycop_FD 75.8 5.50e-21 83.3% 99.0%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4njcA00 3.10.20.730 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like 0.60 27.0 3.61e-01 100.0% 81.7%
1vwxS01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 28.0 3.46e-01 100.0% 83.1%
1vwxS02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 26.0 3.19e-01 100.0% 71.1%
2ebfX01 3.10.670.10 Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. 0.52 33.0 2.88e-01 100.0% 40.4%
4a18X01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.50 26.0 3.08e-01 100.0% 72.2%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1503409 220.3.1.1 beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Rhabdo_glycop 0.82 77.0 7.43e-01 100.0% 91.7%
2530507 220.3.1.3 beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Glycoprot_B_PH1 0.68 61.0 4.92e-01 97.5% 88.3%
1688016 220.3.1.3 beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Glycoprot_B_PH1 0.67 60.0 5.04e-01 100.0% 94.2%
185186 220.3.1.2 beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 0.60 53.0 4.88e-01 99.2% 98.1%
2124211 220.3.1.2 beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 0.59 52.0 4.81e-01 100.0% 98.1%
4990637 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.58 28.0 3.24e-01 100.0% 62.7%
4281587 11.1.1.913 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29899 0.57 40.0 3.29e-01 70.0% 58.5%
3517068 3115.1.1.6 a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 0.56 28.0 3.61e-01 98.3% 86.2%
3508212 3115.1.1.6 a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 0.53 29.0 3.55e-01 100.0% 88.6%
3637741 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 39.0 3.35e-01 79.2% 55.1%
D3 medium residues 338-432
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24833.2 best Rhabdo_glycop_CD 31.2 3.00e-07 66.3% 33.1%
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2awnC03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 27.0 3.30e-01 74.7% 69.0%
1ci0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 41.0 3.26e-01 80.0% 90.2%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 40.0 3.42e-01 80.0% 84.4%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3178368 1.1.5.30 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_oxase_2 0.61 46.0 3.49e-01 80.0% 95.6%
3639554 1.1.5.9 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx,PNP_phzG_C 0.52 39.0 3.06e-01 80.0% 86.3%
3409813 384.1.1.1 few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI 0.52 25.0 3.22e-01 71.6% 80.0%