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glycoprotein
Euk-VirVaprio_virus
glycoprotein__YP_009666837__Vaprio_virus__2100727
Identity
- Accession:
- YP_009666837 ↗
- Protein ID:
- glycoprotein
- Kingdom:
- euk
Quality
75.6
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Rhabdoviridae›
Ledantevirus›
Vaprio_virus
TaxID: 2100727
Cluster
View cluster (70 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 101-223
Domain cluster:
rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00974.25 best | Rhabdo_glycop_FD | 120.5 | 6.00e-35 | 81.3% | 99.0% |
D2
medium
residues 50-66_371-471
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4d6wA01 | 2.30.30.640 | Mainly Beta › Roll › SH3 type barrels. › Rhabdovirus spike glycoprotein G, lateral domain | 0.76 | 57.0 | 6.38e-01 | 79.7% | 98.9% |
D3
medium
residues 224-297
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4d6wA03 | 2.30.29.130 | Mainly Beta › Roll › PH-domain like › | 0.69 | 58.0 | 5.31e-01 | 98.6% | 70.5% |
| 2cmzA03 | 2.30.29.130 | Mainly Beta › Roll › PH-domain like › | 0.68 | 57.0 | 5.29e-01 | 95.9% | 72.0% |
| 4nswA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.58 | 47.0 | 4.13e-01 | 89.2% | 61.5% |
| 1k32A02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 45.0 | 2.94e-01 | 87.8% | 53.4% |
| 2dyuA01 | 3.60.110.10 | Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase | 0.57 | 48.0 | 3.21e-01 | 93.2% | 71.8% |
| 2ex5A00 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.55 | 48.0 | 3.50e-01 | 98.6% | 50.2% |
| 2dx0B01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.54 | 36.0 | 3.59e-01 | 77.0% | 66.7% |
| 2codA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 42.0 | 3.96e-01 | 95.9% | 68.8% |
| 3w1hA01 | 3.90.1150.110 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.54 | 41.0 | 3.08e-01 | 82.4% | 42.3% |
| 4f3lA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 36.0 | 3.12e-01 | 73.0% | 43.3% |
| 1z87A01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 43.0 | 4.03e-01 | 97.3% | 74.0% |
| 1novA00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.50 | 41.0 | 2.77e-01 | 93.2% | 64.4% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3672898 | 295.1.1.3 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA | 0.61 | 48.0 | 4.15e-01 | 89.2% | 94.4% |
| 4403908 | 4.1.1.291 ↗ | beta barrels › SH3 › SH3 › SH3 › YNQ4_N | 0.60 | 35.0 | 4.26e-01 | 73.0% | 95.6% |
| 3592501 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.60 | 51.0 | 4.18e-01 | 95.9% | 62.1% |
| 3368864 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.58 | 36.0 | 3.80e-01 | 71.6% | 69.2% |
| 3514123 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.56 | 46.0 | 3.91e-01 | 90.5% | 76.8% |
| 3696153 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.56 | 42.0 | 2.80e-01 | 81.1% | 78.4% |
| 4028176 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 45.0 | 3.95e-01 | 93.2% | 60.0% |
| 3571958 | 220.1.1.50 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_17 | 0.55 | 47.0 | 4.11e-01 | 98.6% | 62.6% |
| 4028948 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 40.0 | 2.45e-01 | 77.0% | 25.1% |
| 4396772 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.54 | 43.0 | 3.46e-01 | 87.8% | 77.3% |
| 3910652 | 66.1.1.3 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain › Sol_Rieske_ferrdox | 0.53 | 40.0 | 3.56e-01 | 82.4% | 79.1% |
| 4460812 | 3016.1.1.11 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › SelA | 0.53 | 39.0 | 3.50e-01 | 81.1% | 72.7% |
| 4300310 | 3016.1.1.11 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › SelA | 0.52 | 39.0 | 3.49e-01 | 79.7% | 75.0% |
| 3598187 | 66.1.1.0 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain | 0.52 | 39.0 | 3.18e-01 | 81.1% | 68.6% |
| 4335178 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.52 | 38.0 | 3.43e-01 | 81.1% | 70.9% |
| 4836497 | 233.1.1.1 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I | 0.52 | 37.0 | 2.89e-01 | 87.8% | 32.4% |
| 3795915 | 252.1.1.1 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD | 0.51 | 45.0 | 4.06e-01 | 97.3% | 96.0% |
| 5082328 | 1.1.13.77 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join_3 | 0.51 | 35.0 | 3.30e-01 | 73.0% | 100.0% |
| 3998716 | 11.1.5.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF7808 | 0.51 | 42.0 | 3.57e-01 | 91.9% | 54.4% |
| 4119667 | 243.3.1.3 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY | 0.50 | 37.0 | 3.57e-01 | 81.1% | 68.2% |
| 4373835 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.50 | 38.0 | 2.82e-01 | 83.8% | 81.9% |
| 3208301 | 66.1.1.3 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain › Sol_Rieske_ferrdox | 0.50 | 38.0 | 3.28e-01 | 82.4% | 80.8% |
| 3797644 | 252.1.1.0 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD | 0.50 | 43.0 | 3.72e-01 | 97.3% | 80.0% |
D4
medium
residues 326-370
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24833.2 best | Rhabdo_glycop_CD | 31.2 | 2.90e-07 | 100.0% | 37.2% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qm8A03 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.78 | 53.0 | 4.67e-01 | 71.1% | 93.8% |
| 4mh6A00 | 1.10.287.1700 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.76 | 65.0 | 4.36e-01 | 93.3% | 73.0% |
| 2bnlC00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.68 | 55.0 | 3.80e-01 | 93.3% | 29.1% |
| 4h63K00 | 1.10.287.3490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.65 | 50.0 | 4.11e-01 | 95.6% | 50.0% |
| 4bvxA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.58 | 47.0 | 3.70e-01 | 95.6% | 92.4% |
| 4tpsA00 | 3.30.310.250 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Sporulation inhibitor of replication protein SirA | 0.53 | 40.0 | 3.00e-01 | 93.3% | 30.0% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4803436 | 4300.1.1.15 ↗ | beta complex topology › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like › Rhabdo_glycop_CD | 0.85 | 76.0 | 6.23e-01 | 100.0% | 78.8% |
| 3243498 | 129.1.1.0 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like | 0.83 | 71.0 | 3.91e-01 | 95.6% | 12.1% |
| 3202199 | 3939.1.1.0 ↗ | alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain | 0.75 | 63.0 | 5.53e-01 | 91.1% | 64.6% |
| 3351064 | 540.1.1.1 ↗ | few secondary structure elements › Cytochrome c oxidase subunit h › Cytochrome c oxidase subunit h › Cytochrome c oxidase subunit h › COX6B | 0.69 | 61.0 | 5.35e-01 | 97.8% | 78.5% |