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glycoprotein

Euk-Vir

Birds-foot_trefoil_nucleorhabdovirus

glycoprotein__YP_009825049__Birds-foot_trefoil_nucleorhabdovirus__2283315

Identity

Accession:
YP_009825049 ↗
Protein ID:
glycoprotein
Kingdom:
euk

Quality

73.1 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Bird's-foot_trefoil_nucleorhabdovirus

TaxID: 2283315

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 59-87_312-380
PDB
Domain cluster: rep: G__YP_224082__Taro_vein_chlorosis_virus__2908018__D43-73_311-367
D2 high residues 105-234
PDB
Domain cluster: rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196
D3 medium residues 88-100_238-311
PDB
Domain cluster: rep: glycoprotein__YP_009176976__Datura_yellow_vein_nucleorhabdovirus__195059__D86-93_235-309
D4 medium residues 381-429
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.69 46.0 4.51e-01 79.6% 63.0%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.67 45.0 4.42e-01 79.6% 65.4%
4tm3A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 43.0 2.57e-01 75.5% 9.7%
1x05A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 51.0 3.91e-01 100.0% 72.1%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 41.0 3.92e-01 79.6% 57.6%
6iw6A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.62 43.0 3.41e-01 75.5% 85.2%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 45.0 4.04e-01 79.6% 67.1%
4irzA01 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.61 47.0 2.82e-01 91.8% 31.2%
4eqaC00 2.40.128.650 Mainly Beta › Beta Barrel › Lipocalin › 0.61 50.0 3.69e-01 98.0% 55.3%
1h3zA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 44.0 3.51e-01 79.6% 42.6%
3nybA02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.60 42.0 3.32e-01 75.5% 84.5%
3go5A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 47.0 4.30e-01 91.8% 80.0%
2j3lA01 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.59 44.0 3.45e-01 81.6% 81.4%
1k32A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 48.0 2.97e-01 100.0% 29.7%
1x0tA02 6.20.50.20 Special › Other non-globular › N-terminal domain of TfIIb › 0.58 40.0 4.13e-01 73.5% 97.8%
2rsmA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 44.0 3.49e-01 87.8% 49.6%
4p78C00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.57 43.0 4.05e-01 87.8% 78.8%
1sjiA03 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 41.0 3.19e-01 83.7% 86.3%
1z8gA01 3.10.250.10 Alpha Beta › Roll › Mac-2 Binding Protein › SRCR-like domain 0.55 39.0 3.14e-01 77.6% 61.5%
3kh8A02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 41.0 3.20e-01 89.8% 89.5%
1y7uA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 39.0 2.84e-01 79.6% 58.5%
2vpjA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.55 44.0 2.84e-01 100.0% 29.4%
5l37C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.54 44.0 3.77e-01 95.9% 77.9%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 38.0 3.65e-01 79.6% 80.3%
1a5yA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.54 37.0 2.43e-01 77.6% 29.6%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 39.0 3.66e-01 85.7% 62.1%
2pn2A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.53 39.0 2.88e-01 81.6% 35.0%
2r39A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.09e-01 81.6% 78.0%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 37.0 3.53e-01 79.6% 75.8%
1upsA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 38.0 2.94e-01 85.7% 75.2%
1nnwB00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.52 35.0 2.33e-01 73.5% 79.7%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 36.0 3.57e-01 85.7% 91.5%
1twfI02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.50 37.0 3.46e-01 91.8% 81.6%
3rauA00 1.25.40.280 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › alix/aip1 like domains 0.50 36.0 2.26e-01 81.6% 43.6%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4000403 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.75 51.0 5.12e-01 77.6% 70.0%
3437523 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.73 49.0 4.35e-01 77.6% 48.6%
3714156 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 49.0 4.13e-01 79.6% 41.2%
3476583 2003.1.5.98 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6-adenineMlase 0.68 49.0 2.98e-01 77.6% 13.3%
3500033 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 44.0 4.45e-01 71.4% 80.0%
4500981 4071.1.1.1 ↗ beta barrels › BH3618-like › BH3618-like › BH3618-like › FliW 0.65 46.0 3.57e-01 79.6% 80.8%
3488366 5.1.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed 0.62 50.0 3.68e-01 98.0% 32.3%
3701501 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 52.0 4.85e-01 100.0% 98.5%
4586541 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.61 47.0 3.77e-01 81.6% 97.0%
3992780 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.61 50.0 3.24e-01 100.0% 31.3%
3806825 5.1.4.44 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1_2 0.61 45.0 2.76e-01 91.8% 10.9%
3612107 375.8.1.1 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.61 43.0 4.05e-01 75.5% 68.3%
3524770 358.1.1.3 ↗ a+b complex topology › SRCR-like › SRCR-like › SRCR-like › SRCR_2 0.60 42.0 3.42e-01 75.5% 67.4%
4946598 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.60 45.0 2.81e-01 85.7% 25.7%
5014250 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 46.0 3.97e-01 87.8% 76.2%
3505046 5.1.2.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › WD40 0.58 44.0 3.45e-01 85.7% 44.3%
3273270 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 48.0 3.14e-01 100.0% 36.9%
3208203 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.58 39.0 3.87e-01 71.4% 78.2%
3642524 108.1.1.96 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 0.58 45.0 3.35e-01 85.7% 79.2%
3285427 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 46.0 2.86e-01 95.9% 28.2%
4022708 11.1.1.164 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Trs65 0.56 39.0 2.95e-01 75.5% 75.4%
3985807 375.1.1.130 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_Tnp_IS1 0.56 43.0 4.51e-01 85.7% 100.0%
None — 0.56 45.0 2.88e-01 100.0% 24.5%
3281618 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.56 48.0 3.87e-01 100.0% 60.0%
4933213 375.1.1.31 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.56 44.0 3.97e-01 89.8% 81.4%
3914462 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.56 40.0 3.48e-01 83.7% 67.8%
3584345 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.56 39.0 2.96e-01 77.6% 43.0%
4180736 5.1.4.254 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_NOL10_N 0.56 45.0 2.67e-01 98.0% 15.9%
3622714 5.1.5.113 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_WDR19_1st 0.56 45.0 2.79e-01 100.0% 23.4%
3687178 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 44.0 2.64e-01 95.9% 17.6%
3197012 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 45.0 2.76e-01 100.0% 21.7%
3626049 105.2.1.0 ↗ alpha duplicates or obligate multimers › HLH-like › Dimerization domain in LRIM1/APL1C › Dimerization domain in LRIM1/APL1C 0.54 36.0 2.29e-01 79.6% 12.6%
3740597 880.1.1.1 ↗ a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.54 37.0 2.21e-01 75.5% 9.2%
3363301 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.54 43.0 2.74e-01 100.0% 28.4%
3178364 319.1.1.19 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF29696 0.54 37.0 2.98e-01 73.5% 70.5%
3603358 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 41.0 3.92e-01 85.7% 86.7%
4948153 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 41.0 3.79e-01 89.8% 77.1%
3280641 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.52 43.0 3.56e-01 100.0% 59.0%
3972666 4126.1.1.1 ↗ a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › Pro_CA 0.50 35.0 2.38e-01 77.6% 76.9%
D5 medium residues 430-549
PDB