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glycoprotein

Euk-Vir

Citrus_leprosis_virus_N

glycoprotein__YP_009976136__Citrus_leprosis_virus_N__1956177

Identity

Accession:: YP_009976136 ↗
Protein ID:: glycoprotein
Kingdom:: euk

Quality

73.6 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Dichorhavirus› Citrus_leprosis_virus_N

TaxID: 1956177

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 327-399

PDB

Domain cluster: representative

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2asbA01	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.55	35.0	3.50e-01	93.2%	62.7%
3doaA01	2.30.310.10	Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain	0.55	47.0	3.78e-01	100.0%	86.9%
1mdaH00	2.130.10.10	Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase	0.52	44.0	2.90e-01	100.0%	86.7%
2y8nB02	2.20.70.100	Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; ›	0.52	29.0	3.46e-01	93.2%	88.6%
4ci8A01	2.130.10.10	Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase	0.51	43.0	2.89e-01	100.0%	78.3%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3618014	394.1.1.0 ↗	few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins	0.59	33.0	3.93e-01	75.3%	86.7%
3314917	5.1.4.1 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40	0.59	49.0	2.87e-01	98.6%	41.7%
3938492	394.1.1.1 ↗	few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14	0.58	33.0	3.97e-01	80.8%	88.9%
1291899	5.1.4.293 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, Beta-prop_EML_2	0.57	33.0	3.76e-01	95.9%	80.8%
3930900	394.1.1.1 ↗	few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14	0.55	32.0	3.84e-01	76.7%	95.3%
3492308	5.1.4.62 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN	0.55	45.0	2.97e-01	98.6%	93.1%
3620101	391.1.2.1 ↗	few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC	0.53	30.0	3.10e-01	93.2%	57.1%
3217921	394.1.1.1 ↗	few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14	0.53	30.0	3.48e-01	95.9%	84.4%
4111759	2.1.1.84 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_N	0.51	35.0	2.91e-01	95.9%	39.3%
4956851	2.1.1.0 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein	0.51	35.0	3.70e-01	78.1%	80.0%
3994489	394.1.1.0 ↗	few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins	0.51	30.0	3.42e-01	97.3%	84.0%
5037005	318.1.1.1 ↗	a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6	0.50	34.0	3.38e-01	97.3%	66.3%

D2 medium residues 23-58_250-326

PDB

Domain cluster: rep: G__YP_224082__Taro_vein_chlorosis_virus__2908018__D43-73_311-367

D3 medium residues 59-249

PDB

Domain cluster: rep: glycoprotein__YP_001285391__European_bat_1_lyssavirus__57482__D64-223_238-266

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3zoqC00	6.20.250.30	Special › Other non-globular › Double Stranded RNA Binding Domain ›	0.59	20.0	3.41e-01	73.8%	98.1%
6rptC00	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.57	21.0	2.69e-01	89.0%	51.8%
2jvuA00	2.60.40.2290	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.53	20.0	2.70e-01	92.1%	62.2%
6julA02	3.30.1490.100	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain	0.52	20.0	2.75e-01	89.0%	65.6%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1503409	220.3.1.1 ↗	beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Rhabdo_glycop	0.68	47.0	5.47e-01	72.8%	100.0%
5043357	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.60	22.0	2.91e-01	71.7%	58.1%
3280008	3115.1.1.2 ↗	a+b two layers › GP2-like › RplX-like › RplX-like › DUF4288	0.55	25.0	3.48e-01	94.2%	87.8%
3267956	11.1.1.1311 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28708	0.54	21.0	2.64e-01	90.6%	52.5%
2530507	220.3.1.3 ↗	beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Glycoprot_B_PH1	0.53	40.0	3.80e-01	76.4%	98.2%
3892842	3115.1.1.0 ↗	a+b two layers › GP2-like › RplX-like › RplX-like	0.53	21.0	3.28e-01	74.9%	98.5%