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glycoprotein

Euk-Vir

Lepeophtheirus_salmonis_rhabdovirus_9

glycoprotein__YP_010084455__Lepeophtheirus_salmonis_rhabdovirus_9__1573760

Identity

Accession:: YP_010084455 ↗
Protein ID:: glycoprotein
Kingdom:: euk

Quality

70.2 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Caligrhavirus› Lepeophtheirus_salmonis_rhabdovirus_9

TaxID: 1573760

Cluster

View cluster (70 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 77-88_214-292

PDB

Domain cluster: rep: glycoprotein__YP_009094345__Scophthalmus_maximus_rhabdovirus__936149__D52-65_200-299

CATH (25)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4d6wA03	2.30.29.130	Mainly Beta › Roll › PH-domain like ›	0.78	69.0	6.81e-01	95.6%	97.9%
2cmzA03	2.30.29.130	Mainly Beta › Roll › PH-domain like ›	0.76	67.0	6.67e-01	95.6%	97.8%
3cm1A00	2.30.31.20	Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB	0.64	49.0	4.36e-01	82.4%	75.7%
4hhvA00	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.64	51.0	4.89e-01	84.6%	87.4%
1qqgA01	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.64	51.0	4.91e-01	86.8%	99.0%
3ml4C01	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.63	50.0	4.75e-01	84.6%	90.7%
2da0A00	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.63	51.0	4.76e-01	86.8%	78.9%
3a58A01	2.30.29.90	Mainly Beta › Roll › PH-domain like ›	0.63	51.0	4.18e-01	90.1%	69.5%
4nswA02	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.62	49.0	4.68e-01	86.8%	85.3%
1wi1A01	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.62	50.0	4.69e-01	89.0%	96.4%
2eqmA01	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.61	35.0	4.37e-01	79.1%	96.2%
2ec1A00	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.61	49.0	4.49e-01	87.9%	94.9%
1jegA00	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.57	33.0	3.88e-01	86.8%	85.0%
2eqjA00	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.57	31.0	3.52e-01	80.2%	71.2%
1q67A01	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.56	45.0	3.96e-01	87.9%	95.0%
2d9tA01	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.56	29.0	3.69e-01	79.1%	89.8%
1mhnA00	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.55	30.0	3.55e-01	83.5%	79.7%
3qwxX01	3.30.505.10	Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain	0.54	35.0	3.28e-01	97.8%	52.7%
2lydA00	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.53	42.0	3.76e-01	87.9%	81.3%
1vwxA02	2.30.30.30	Mainly Beta › Roll › SH3 type barrels. ›	0.53	32.0	3.41e-01	84.6%	68.8%
2jngA00	2.30.30.30	Mainly Beta › Roll › SH3 type barrels. ›	0.52	30.0	3.27e-01	79.1%	67.5%
1cbiA00	2.40.128.20	Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain	0.52	43.0	3.82e-01	93.4%	72.1%
4z48A00	2.50.20.10	Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX	0.51	43.0	3.20e-01	92.3%	57.1%
2ct4A00	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.51	30.0	3.34e-01	87.9%	74.3%
7dpyB01	2.40.128.200	Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor	0.51	39.0	4.09e-01	98.9%	94.0%

ECOD (38)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4343392	220.1.1.1 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › PH	0.67	53.0	5.06e-01	86.8%	97.3%
4332725	295.1.1.2 ↗	a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › SsgA	0.67	51.0	4.59e-01	82.4%	78.5%
3235213	220.1.1.1 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › PH	0.66	53.0	4.71e-01	87.9%	98.5%
3301383	4.1.1.141 ↗	beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor	0.66	34.0	4.26e-01	83.5%	88.0%
3300051	4.1.1.141 ↗	beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor	0.64	35.0	3.81e-01	81.3%	64.0%
3676844	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.63	35.0	3.81e-01	80.2%	65.3%
3255344	220.1.1.27 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD	0.63	52.0	4.76e-01	90.1%	98.3%
3597690	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.63	36.0	4.07e-01	79.1%	74.3%
3450200	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.62	34.0	3.58e-01	79.1%	57.6%
3714156	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.62	36.0	3.72e-01	80.2%	61.2%
3936885	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.62	34.0	3.94e-01	80.2%	75.4%
3818428	4.1.1.66 ↗	beta barrels › SH3 › SH3 › SH3 › LBR_tudor	0.61	34.0	3.72e-01	80.2%	65.3%
3329059	4.1.1.141 ↗	beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor	0.61	34.0	4.24e-01	80.2%	98.0%
3660244	4.1.1.141 ↗	beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor	0.61	36.0	3.92e-01	79.1%	70.7%
3342430	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.61	34.0	3.71e-01	80.2%	65.3%
3495482	220.1.1.0 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like	0.60	48.0	4.66e-01	86.8%	99.0%
3423337	4.1.1.141 ↗	beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor	0.60	34.0	3.58e-01	80.2%	61.3%
3876027	220.1.1.13 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1	0.58	48.0	4.16e-01	93.4%	82.7%
3937216	220.1.1.13 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1	0.58	46.0	4.16e-01	87.9%	87.7%
3648024	220.1.1.13 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1	0.58	46.0	4.22e-01	87.9%	82.4%
3880284	868.1.1.3 ↗	a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med20	0.58	40.0	3.06e-01	70.3%	96.6%
3741020	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.58	32.0	3.60e-01	80.2%	70.0%
3660755	4.8.1.21 ↗	beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PTM_DIR17_Tudor	0.57	35.0	3.78e-01	79.1%	73.3%
3406663	4.1.1.54 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_2	0.57	31.0	3.88e-01	82.4%	94.0%
3388895	220.1.1.170 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_alsin	0.57	45.0	4.28e-01	87.9%	88.2%
3486496	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.56	29.0	3.57e-01	83.5%	81.8%
3485745	4.1.1.1 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_1	0.56	32.0	3.78e-01	87.9%	85.0%
3475240	4.1.1.304 ↗	beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O	0.55	32.0	3.89e-01	78.0%	94.5%
3850775	4.1.1.101 ↗	beta barrels › SH3 › SH3 › SH3 › Tudor_2	0.55	29.0	3.36e-01	83.5%	69.2%
146236	4.1.1.51 ↗	beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor	0.55	33.0	3.15e-01	81.3%	50.0%
3972292	9.11.1.0 ↗	beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like	0.55	41.0	4.30e-01	100.0%	89.2%
373957	3091.1.1.1 ↗	a+b complex topology › Myosin VI cargo binding domain › Myosin VI cargo binding domain › Myosin VI cargo binding domain › Myosin-VI_CBD	0.54	34.0	3.07e-01	85.7%	45.7%
3731812	3794.1.1.0 ↗	a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit	0.54	40.0	3.34e-01	79.1%	63.1%
4213135	4.1.1.38 ↗	beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C	0.53	34.0	3.12e-01	79.1%	47.6%
3404988	3794.1.1.0 ↗	a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit	0.52	35.0	3.08e-01	78.0%	45.9%
3576940	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.52	35.0	2.64e-01	80.2%	28.4%
3941288	9.1.1.0 ↗	beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins	0.51	44.0	3.81e-01	96.7%	71.0%
5065570	4.1.1.40 ↗	beta barrels › SH3 › SH3 › SH3 › FeoA	0.50	35.0	3.63e-01	79.1%	77.6%

D2 high residues 92-207

PDB

Domain cluster: rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00974.25 best	Rhabdo_glycop_FD	68.8	8.00e-19	85.3%	94.9%

D3 medium residues 44-62_329-438

PDB

Domain cluster: rep: glycoprotein__YP_010087312__Muir_Springs_virus__932700__D321-442

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF24833.2 best	Rhabdo_glycop_CD	40.4	4.00e-10	58.9%	57.0%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4d6wA01	2.30.30.640	Mainly Beta › Roll › SH3 type barrels. › Rhabdovirus spike glycoprotein G, lateral domain	0.72	48.0	5.64e-01	77.5%	95.7%
2hj1A00	3.10.20.280	Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like	0.55	26.0	3.22e-01	86.8%	71.4%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3384902	304.8.1.79 ↗	a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ALE2_N	0.50	27.0	2.82e-01	79.1%	54.8%