←Back to structures
glycoprotein
Euk-VirCulex_phasma-like_virus
glycoprotein__YP_010085106__Culex_phasma-like_virus__2010276
Identity
- Accession:
- YP_010085106 ↗
- Protein ID:
- glycoprotein
- Kingdom:
- euk
Quality
70.6
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Bunyaviricetes›
Elliovirales›
Phasmaviridae›
Orthophasmavirus›
Culex_phasma-like_virus
TaxID: 2010276
Cluster
View cluster (10 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 238-308
Domain cluster:
rep: glycoprotein_precursor__YP_009305131__Wuhan_mosquito_virus_1__1608126__D283-346
D2
high
residues 487-565
Domain cluster:
rep: glycoprotein_precursor,_partial__YP_009666269__Mothra_virus__1892236__D479-542
D3
medium
residues 9-60
D4
medium
residues 174-221_354-368_469-485
D5
medium
residues 222-237_310-353_369-468
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3mahA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.60 | 20.0 | 2.98e-01 | 98.8% | 64.3% |
| 2hv2A01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 20.0 | 2.63e-01 | 95.0% | 56.8% |
| 2hqlA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 21.0 | 2.71e-01 | 100.0% | 61.5% |
| 3oe3C00 | 2.40.128.200 | Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor | 0.51 | 20.0 | 2.60e-01 | 86.9% | 58.0% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3056811 | 5090.1.1.2 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › Hanta_Gc_N | 0.74 | 69.0 | 5.43e-01 | 100.0% | 76.3% |
| 4840163 | 11.1.1.28 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha_E1_glycop | 0.68 | 63.0 | 5.10e-01 | 100.0% | 82.3% |
| 406733 | 5090.1.1.3 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › Alpha_E1_glycop | 0.68 | 62.0 | 5.07e-01 | 100.0% | 81.6% |
| 4403166 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.63 | 17.0 | 2.72e-01 | 100.0% | 56.9% |
| 3652702 | 5090.1.1.7 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › HAP2-GCS1 | 0.63 | 58.0 | 4.60e-01 | 100.0% | 71.7% |
| 3494249 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.59 | 21.0 | 2.37e-01 | 100.0% | 39.3% |
| 3519958 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.58 | 22.0 | 3.21e-01 | 99.4% | 75.7% |
| 5052888 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.55 | 23.0 | 2.63e-01 | 95.0% | 48.8% |
| 3555586 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.51 | 24.0 | 2.96e-01 | 93.1% | 68.4% |
D6
medium
residues 588-643
Domain cluster:
representative