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glycoprotein
Euk-VirNew_Minto_virus
glycoprotein__YP_010086568__New_Minto_virus__1272952
Identity
- Accession:
- YP_010086568 ↗
- Protein ID:
- glycoprotein
- Kingdom:
- euk
Quality
71.2
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Rhabdoviridae›
Sawgrhavirus›
New_Minto_virus
TaxID: 1272952
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 73-190
Domain cluster:
rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00974.25 best | Rhabdo_glycop_FD | 85.6 | 4.70e-24 | 84.8% | 99.0% |
D2
medium
residues 198-267
Domain cluster:
rep: glycoprotein__YP_009666837__Vaprio_virus__2100727__D224-297
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4d6wA03 | 2.30.29.130 | Mainly Beta › Roll › PH-domain like › | 0.79 | 72.0 | 6.46e-01 | 100.0% | 85.3% |
| 2cmzA03 | 2.30.29.130 | Mainly Beta › Roll › PH-domain like › | 0.73 | 65.0 | 5.95e-01 | 100.0% | 88.2% |
| 2ci8A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.60 | 31.0 | 3.40e-01 | 82.9% | 60.7% |
| 3gjyA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 49.0 | 3.30e-01 | 95.7% | 40.5% |
| 2dk7A00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.57 | 35.0 | 3.52e-01 | 78.6% | 58.9% |
| 2xp1A02 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.55 | 38.0 | 3.70e-01 | 72.9% | 68.8% |
| 2dx0A00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.54 | 37.0 | 3.13e-01 | 71.4% | 57.3% |
| 1h91A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 46.0 | 3.52e-01 | 100.0% | 68.9% |
| 1lp9E02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 37.0 | 3.58e-01 | 72.9% | 93.8% |
| 2dx0B01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.51 | 36.0 | 3.57e-01 | 74.3% | 80.0% |
| 4yo1A01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.51 | 37.0 | 3.46e-01 | 77.1% | 93.3% |
| 3tzgA00 | 2.40.160.150 | Mainly Beta › Beta Barrel › Porin › | 0.50 | 42.0 | 3.03e-01 | 100.0% | 77.4% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3495482 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.70 | 56.0 | 4.99e-01 | 87.1% | 86.0% |
| 4932387 | 309.1.2.1 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain › tRNA_SAD | 0.66 | 38.0 | 3.39e-01 | 80.0% | 40.4% |
| 3766764 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.58 | 44.0 | 3.01e-01 | 85.7% | 33.0% |
| 3474731 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.56 | 39.0 | 2.22e-01 | 71.4% | 10.8% |
| 3787261 | 59.1.1.4 ↗ | beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Ctf8 | 0.56 | 39.0 | 3.19e-01 | 72.9% | 70.8% |
| 3542444 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.54 | 38.0 | 3.01e-01 | 74.3% | 47.1% |
| 3213942 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.53 | 37.0 | 3.31e-01 | 77.1% | 72.7% |
| 2265 | 702.1.1.4 ↗ | beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack | 0.52 | 37.0 | 2.94e-01 | 92.9% | 35.6% |
| 3406356 | 394.1.1.1 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 | 0.51 | 32.0 | 3.23e-01 | 80.0% | 62.9% |
| 4985176 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.51 | 34.0 | 3.00e-01 | 70.0% | 88.2% |
| 4007747 | 3735.1.1.14 ↗ | beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › TEN_YD-shell | 0.51 | 43.0 | 2.38e-01 | 97.1% | 24.8% |
| 2543709 | 2003.1.2.60 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › DAO, NAD_binding_8 | 0.51 | 40.0 | 2.85e-01 | 87.1% | 97.3% |
| 4057011 | 243.5.1.0 ↗ | a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region | 0.50 | 34.0 | 3.15e-01 | 72.9% | 54.4% |
D3
medium
residues 319-417
Domain cluster:
rep: glycoprotein__YP_010087312__Muir_Springs_virus__932700__D321-442
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4d6wA01 | 2.30.30.640 | Mainly Beta › Roll › SH3 type barrels. › Rhabdovirus spike glycoprotein G, lateral domain | 0.81 | 59.0 | 6.10e-01 | 74.7% | 81.5% |
| 1yqsA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.54 | 42.0 | 2.99e-01 | 86.9% | 74.2% |
| 3rjuA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.52 | 40.0 | 2.82e-01 | 84.8% | 79.2% |
| 1wycA02 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.51 | 39.0 | 3.05e-01 | 82.8% | 62.9% |
D4
medium
residues 441-488