glycoprotein

Euk-Vir

Harrison_Dam_virus

glycoprotein__YP_010086579__Harrison_Dam_virus__1569259

Identity

71.2 mean pLDDT

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Sunrhavirus› Harrison_Dam_virus

TaxID: 1569259

View cluster (9 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-26_325-389

PDB

Domain cluster: rep: glycoprotein__YP_009362242__Mount_Elgon_bat_virus__380434__D26-54_274-340

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF24833.2 best	Rhabdo_glycop_CD	30.4	5.20e-07	85.7%	52.1%

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4tpvA00	3.40.33.10	Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP	0.60	41.0	3.31e-01	71.4%	81.9%
5mmjh01	3.30.1370.30	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 ›	0.56	29.0	3.13e-01	96.7%	57.3%
4d6wB02	6.10.140.740	Special › Helix non-globular › Helix Hairpins ›	0.56	46.0	4.61e-01	91.2%	87.0%
4p27A00	3.40.33.10	Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP	0.54	37.0	3.10e-01	70.3%	94.8%
1nrkA01	3.30.70.1630	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.52	31.0	3.08e-01	97.8%	53.6%
3cueC00	3.30.450.70	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase ›	0.52	41.0	3.52e-01	84.6%	94.4%
2hfzA01	3.30.70.2840	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Flavivirus RNA-directed RNA polymerase, thumb domain	0.51	31.0	3.20e-01	98.9%	62.9%
2hnkA00	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.51	37.0	2.77e-01	74.7%	53.3%
3o6qA02	3.30.70.2720	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.51	38.0	3.56e-01	100.0%	64.0%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4803436	4300.1.1.15 ↗	beta complex topology › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like › Rhabdo_glycop_CD	0.87	60.0	6.42e-01	71.4%	81.2%
3550154	109.4.1.1493 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Zw10_middle, ZW10_C, ZW10_C2	0.59	41.0	2.45e-01	71.4%	22.5%
3945514	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.58	40.0	2.85e-01	71.4%	67.1%
3684495	136.1.1.1 ↗	alpha complex topology › Heme-dependent peroxidases › Heme-dependent peroxidases › Heme-dependent peroxidases › peroxidase	0.57	42.0	2.96e-01	78.0%	65.2%
5001301	3636.1.1.0 ↗	a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain	0.55	39.0	3.48e-01	73.6%	100.0%
5023279	304.3.1.0 ↗	a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain	0.52	28.0	3.25e-01	95.6%	75.0%
141639	223.10.1.1 ↗	a+b three layers › Profilin-like › Stage II sporulation protein SA › Stage II sporulation protein SA › SpoIISA_toxin	0.51	38.0	3.30e-01	100.0%	50.3%
3787986	223.2.1.8 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like › Sybindin	0.50	39.0	3.35e-01	82.4%	93.7%
3602727	242.1.1.7 ↗	a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3	0.50	36.0	3.63e-01	74.7%	82.2%

D2 medium residues 27-221

PDB

Domain cluster: rep: glycoprotein__YP_001285391__European_bat_1_lyssavirus__57482__D64-223_238-266

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00974.25 best	Rhabdo_glycop_FD	54.8	1.80e-14	46.7%	99.0%

D3 medium residues 390-463

PDB

Domain cluster: representative

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2ra6C00	2.40.128.20	Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain	0.60	43.0	3.55e-01	77.0%	73.4%
1xkiA00	2.40.128.20	Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain	0.57	42.0	3.58e-01	79.7%	80.5%
3mogA03	3.30.750.190	Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA ›	0.54	32.0	3.03e-01	82.4%	45.7%
3u4kA00	2.60.40.3310	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.54	33.0	2.61e-01	95.9%	27.0%
7xpkA01	2.30.30.490	Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain	0.51	42.0	3.45e-01	94.6%	88.3%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
None	—		0.55	39.0	3.02e-01	77.0%	62.7%
4163087	5.1.4.40 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2	0.54	44.0	2.84e-01	91.9%	35.8%
3226733	391.1.2.0 ↗	few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related	0.52	33.0	3.52e-01	89.2%	73.8%
4841506	4.1.1.20 ↗	beta barrels › SH3 › SH3 › SH3 › BAH	0.51	35.0	3.31e-01	71.6%	84.1%
5012458	206.1.3.23 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RNA_ligase	0.50	42.0	2.99e-01	94.6%	62.1%