glycoprotein

Euk-Vir

Holmes_Jungle_virus

glycoprotein__YP_010086767__Holmes_Jungle_virus__2021721

Identity

68.4 mean pLDDT

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Hapavirus› Holmes_Jungle_virus

TaxID: 2021721

View cluster (14 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 64-91_337-496

PDB

Domain cluster: rep: glycoprotein__YP_010086563__Kwatta_virus__1272945__D21-47_334-461

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF24833.2 best	Rhabdo_glycop_CD	43.3	5.40e-11	82.5%	58.7%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2qsdA01	3.10.20.10	Alpha Beta › Roll › Ubiquitin-like (UB roll) ›	0.58	22.0	3.59e-01	84.6%	94.0%
1vwxS01	3.10.20.10	Alpha Beta › Roll › Ubiquitin-like (UB roll) ›	0.55	21.0	3.38e-01	80.9%	91.5%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3266198	6109.1.1.1 ↗	a+b two layers › N-terminal domain of chitin biosynthesis protein CHS6 › N-terminal domain of chitin biosynthesis protein CHS6 › N-terminal domain of chitin biosynthesis protein CHS6 › ChAPs	0.59	40.0	4.07e-01	86.7%	70.0%

D2 high residues 117-236

PDB

Domain cluster: rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00974.25 best	Rhabdo_glycop_FD	109.2	2.10e-31	82.5%	99.0%

D3 medium residues 92-116_240-336

PDB

Domain cluster: rep: glycoprotein__YP_009305101__Wuhan_Louse_Fly_Virus_5__1608119__D70-87_212-294