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glycoprotein

Euk-Vir

Ohlsdorf_virus

glycoprotein__YP_010086785__Ohlsdorf_virus__2040592

Identity

Accession:
YP_010086785 ↗
Protein ID:
glycoprotein
Kingdom:
euk

Quality

71.1 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Ohlsrhavirus› Ohlsdorf_virus

TaxID: 2040592

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 30-51_286-373_385-420
PDB
Domain cluster: rep: glycoprotein__YP_010086563__Kwatta_virus__1272945__D21-47_334-461
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24833.2 best Rhabdo_glycop_CD 53.3 4.20e-14 74.7% 57.9%
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4d6wA01 2.30.30.640 Mainly Beta › Roll › SH3 type barrels. › Rhabdovirus spike glycoprotein G, lateral domain 0.67 40.0 4.99e-01 91.1% 94.6%
4d6wB02 6.10.140.740 Special › Helix non-globular › Helix Hairpins › 0.67 36.0 4.55e-01 89.0% 84.8%
3gkuA03 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.57 27.0 3.70e-01 71.2% 90.1%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4803436 4300.1.1.15 ↗ beta complex topology › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like › Rhabdo_glycop_CD 0.79 43.0 5.76e-01 73.3% 97.5%
3958873 633.6.1.0 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like 0.52 36.0 3.71e-01 71.9% 98.6%
D2 high residues 56-71_199-261
PDB
Domain cluster: rep: glycoprotein__YP_009305101__Wuhan_Louse_Fly_Virus_5__1608119__D70-87_212-294
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4d6wA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.75 67.0 6.29e-01 97.5% 81.1%
2cmzA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.70 62.0 5.85e-01 97.5% 84.9%
7z6eA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 57.0 4.96e-01 96.2% 88.5%
4chmB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 54.0 4.72e-01 96.2% 77.4%
3fssA01 2.30.29.120 Mainly Beta › Roll › PH-domain like › 0.63 54.0 4.56e-01 97.5% 73.5%
4a6fA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 54.0 4.93e-01 100.0% 89.5%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.57 46.0 4.30e-01 94.9% 89.4%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 47.0 4.13e-01 100.0% 77.6%
3dsbA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 35.0 3.30e-01 86.1% 52.5%
6nffA02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 46.0 3.05e-01 96.2% 43.9%
3obqA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.53 43.0 3.61e-01 89.9% 62.4%
7mhwA01 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.53 44.0 4.32e-01 94.9% 95.5%
1so7A00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.52 37.0 2.52e-01 79.7% 95.6%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 43.0 3.63e-01 94.9% 71.8%
2ktsA01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.52 40.0 3.71e-01 86.1% 100.0%
1luiA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 41.0 3.80e-01 98.7% 67.6%
4zgfA00 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.50 40.0 3.44e-01 92.4% 92.2%
3p2nB02 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.50 42.0 2.89e-01 100.0% 47.3%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
160843 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.68 60.0 5.17e-01 100.0% 81.1%
3498392 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 56.0 4.98e-01 97.5% 84.9%
3529648 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.66 59.0 4.89e-01 100.0% 67.9%
3176453 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.65 58.0 4.82e-01 100.0% 67.9%
3891317 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.65 58.0 4.84e-01 100.0% 71.1%
3877687 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 55.0 4.74e-01 98.7% 83.1%
3548037 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.64 57.0 4.84e-01 100.0% 73.1%
3583313 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 53.0 4.62e-01 97.5% 76.9%
3538619 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 55.0 4.72e-01 98.7% 76.2%
3555102 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 53.0 4.74e-01 98.7% 94.2%
3515884 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 53.0 4.70e-01 98.7% 83.3%
3222570 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 53.0 4.73e-01 98.7% 83.5%
3609858 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.60 53.0 4.81e-01 97.5% 88.6%
3596842 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 52.0 4.57e-01 97.5% 85.8%
3436556 220.1.1.86 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.59 49.0 5.07e-01 94.9% 96.0%
3911252 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 52.0 4.96e-01 100.0% 87.4%
3243776 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.58 50.0 4.48e-01 96.2% 91.8%
3601598 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 50.0 4.39e-01 97.5% 74.2%
3479384 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 48.0 3.63e-01 96.2% 52.4%
3937216 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.57 49.0 4.22e-01 100.0% 80.8%
3514202 2008.6.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central 0.56 40.0 3.00e-01 75.9% 47.0%
3464886 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.54 35.0 3.93e-01 96.2% 88.3%
5073888 4.1.2.2 ↗ beta barrels › SH3 › SH3 › Stringent starvation protein B, SspB › MJ1316 0.54 35.0 3.50e-01 97.5% 65.0%
4518121 9.7.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Metalloprotease inhibitor › Metalloprotease inhibitor › Inh 0.53 45.0 4.20e-01 94.9% 85.0%
4124063 9.7.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Metalloprotease inhibitor › Metalloprotease inhibitor › Inh 0.52 44.0 4.22e-01 93.7% 92.2%
3213025 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.51 42.0 3.31e-01 96.2% 86.3%
3865742 319.1.1.12 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS_DNAAF11_C 0.50 33.0 3.30e-01 88.6% 63.5%
3359021 5.1.5.86 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Kelch_1 0.50 42.0 2.89e-01 98.7% 63.5%
D3 high residues 75-191
PDB
Domain cluster: rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00974.25 best Rhabdo_glycop_FD 96.5 1.80e-27 85.5% 100.0%