glycoprotein

Euk-Vir

Cabbage_cytorhabdovirus_1

glycoprotein__YP_010086793__Cabbage_cytorhabdovirus_1__2051550

Identity

71.3 mean pLDDT

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Alphacytorhabdovirus› Cabbage_cytorhabdovirus_1

TaxID: 2051550

View cluster (9 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 105-225

PDB

Domain cluster: rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196

D2 medium residues 56-86_306-446

PDB

Domain cluster: representative

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2dk6A01	3.30.720.50	Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 ›	0.54	23.0	3.09e-01	73.3%	71.3%
7sz2A01	3.30.720.50	Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 ›	0.53	23.0	3.13e-01	73.3%	76.1%
4ijjB00	1.20.120.910	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain	0.52	35.0	3.96e-01	75.0%	89.2%
1tjlA00	1.20.120.910	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain	0.50	34.0	3.66e-01	74.4%	80.0%
3rh9A01	3.40.605.10	Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1	0.50	37.0	3.13e-01	76.7%	68.9%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3877833	4357.1.1.1 ↗	beta barrels › WWE domain › WWE domain › WWE domain › WWE	0.57	23.0	3.32e-01	73.3%	78.8%
5046979	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.56	28.0	3.49e-01	79.1%	75.5%
5045767	331.1.1.0 ↗	a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like	0.55	24.0	3.15e-01	72.1%	72.2%
4944138	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.55	26.0	3.25e-01	77.9%	72.4%
5078530	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.52	27.0	3.33e-01	79.1%	78.1%
4977806	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.51	27.0	3.11e-01	80.2%	66.2%
3390900	174.1.1.29 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF4728	0.50	36.0	3.74e-01	72.7%	96.2%

D3 medium residues 87-104_233-305

PDB

Domain cluster: rep: glycoprotein__YP_006576505__Persimmon_virus_A__1211480__D58-82_211-281