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glycoprotein

Euk-Vir

Wheat_yellow_striate_virus

glycoprotein__YP_010086816__Wheat_yellow_striate_virus__2152660

Identity

Accession:
YP_010086816 ↗
Protein ID:
glycoprotein
Kingdom:
euk

Quality

66.2 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Alphanucleorhabdovirus› Wheat_yellow_striate_virus

TaxID: 2152660

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 148-272
PDB
Domain cluster: representative
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1503409 220.3.1.1 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Rhabdo_glycop 0.67 59.0 5.85e-01 100.0% 90.9%
2124201 220.3.1.2 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 0.61 55.0 5.10e-01 100.0% 98.1%
4648475 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.55 26.0 3.48e-01 100.0% 90.0%
3220637 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.54 39.0 4.03e-01 73.6% 100.0%
3176441 11.1.1.41 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.51 35.0 3.00e-01 70.4% 56.0%
3965659 284.1.1.1 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP_C 0.50 35.0 3.92e-01 91.2% 94.7%
3581537 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.50 32.0 3.53e-01 96.0% 78.1%
D2 medium residues 92-133_375-473
PDB
Domain cluster: rep: glycoprotein__YP_010086793__Cabbage_cytorhabdovirus_1__2051550__D56-86_306-446
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5f3yA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 25.0 3.28e-01 92.2% 76.6%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5002569 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.58 23.0 3.65e-01 82.3% 100.0%
3319006 101.1.2.497 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25874 0.58 37.0 4.08e-01 87.2% 80.9%
3617842 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.56 28.0 3.65e-01 84.4% 85.0%
4944923 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 33.0 3.41e-01 87.2% 65.4%
5059169 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 32.0 3.27e-01 87.9% 62.1%
D3 medium residues 134-147_276-343
PDB
Domain cluster: rep: glycoprotein__YP_009506260__Cacao_swollen_shoot_Togo_A_virus__1960254__D37-59_197-249
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gumB03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.72 64.0 5.66e-01 100.0% 90.1%
3fvcA03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.68 61.0 5.57e-01 100.0% 94.5%
1lvbA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 42.0 3.84e-01 97.6% 51.9%
1v5mA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 52.0 4.48e-01 97.6% 72.1%
3pp2A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 53.0 4.79e-01 98.8% 91.1%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 52.0 4.54e-01 97.6% 67.7%
1v5pA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 50.0 4.74e-01 97.6% 91.3%
2codA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 48.0 4.62e-01 97.6% 80.2%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 48.0 4.58e-01 96.3% 86.0%
8b2gA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 39.0 4.47e-01 96.3% 100.0%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 46.0 4.41e-01 97.6% 80.8%
2i2lB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 40.0 4.30e-01 100.0% 98.5%
2lfuA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.53 46.0 4.05e-01 100.0% 85.3%
3au4A04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 42.0 4.09e-01 98.8% 79.6%
2epdA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 36.0 3.72e-01 97.6% 77.6%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 35.0 3.81e-01 95.1% 87.7%
4kc7A02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.51 43.0 4.13e-01 97.6% 98.0%
4gs5A01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.50 36.0 2.61e-01 75.6% 48.8%
4k17B01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 42.0 3.92e-01 98.8% 74.8%
3pe0A03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 32.0 3.49e-01 100.0% 81.2%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 36.0 3.98e-01 96.3% 95.5%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3925159 220.4.1.0 ↗ beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins 0.65 53.0 5.44e-01 97.6% 93.8%
3575735 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 54.0 4.89e-01 97.6% 89.2%
3940444 220.4.1.0 ↗ beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins 0.63 52.0 5.02e-01 100.0% 78.9%
3579502 220.1.1.46 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_14 0.61 52.0 4.38e-01 97.6% 77.2%
3993001 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 48.0 4.01e-01 97.6% 67.1%
4953970 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 48.0 4.30e-01 97.6% 80.0%
3704470 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 47.0 4.06e-01 98.8% 80.7%
3414375 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 47.0 4.12e-01 97.6% 70.3%
3594856 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 47.0 4.34e-01 98.8% 76.4%
3600269 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 38.0 3.38e-01 100.0% 48.8%
3542245 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.53 32.0 3.44e-01 97.6% 70.0%
3491784 220.1.1.158 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.53 45.0 3.96e-01 97.6% 83.2%
3259514 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 44.0 3.96e-01 97.6% 76.7%
3219807 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 36.0 3.74e-01 93.9% 77.3%
3968620 10.32.1.280 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF3999 0.52 39.0 3.42e-01 98.8% 52.8%
3995153 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 43.0 4.01e-01 97.6% 81.9%