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glycoprotein

Euk-Vir

Yerba_mate_chlorosis-associated_virus

glycoprotein__YP_010087163__Yerba_mate_chlorosis-associated_virus__2487100

Identity

Accession:
YP_010087163 ↗
Protein ID:
glycoprotein
Kingdom:
euk

Quality

65.9 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Betacytorhabdovirus› Yerba_mate_chlorosis-associated_virus

TaxID: 2487100

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 154-275
PDB
Domain cluster: rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4r8tB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 25.0 3.09e-01 100.0% 61.6%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1503409 220.3.1.1 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Rhabdo_glycop 0.77 68.0 6.67e-01 100.0% 87.9%
3583154 220.3.1.0 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins 0.65 59.0 5.68e-01 100.0% 90.0%
1688016 220.3.1.3 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Glycoprot_B_PH1 0.63 57.0 4.80e-01 100.0% 92.3%
2124201 220.3.1.2 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 0.59 53.0 4.86e-01 100.0% 96.2%
4032409 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 29.0 3.59e-01 100.0% 78.7%
3181629 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 32.0 2.80e-01 71.3% 42.2%
D2 medium residues 130-147_283-388
PDB
D3 medium residues 412-490
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1hh2P02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 38.0 4.20e-01 92.4% 68.3%
3d31A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 32.0 3.91e-01 91.1% 78.3%
3d3rA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 37.0 3.67e-01 93.7% 56.6%
3ossC00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.57 36.0 3.88e-01 88.6% 76.9%
5xyig01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 45.0 3.13e-01 93.7% 98.7%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 37.0 3.24e-01 94.9% 47.6%
7ylzA01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.52 37.0 2.74e-01 74.7% 100.0%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 31.0 3.59e-01 93.7% 83.6%
7zoiA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.50 41.0 3.63e-01 92.4% 86.1%
6e55A01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.50 33.0 3.45e-01 93.7% 73.0%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3338134 4.1.1.155 ↗ beta barrels › SH3 › SH3 › SH3 › CRR42-like 0.59 33.0 3.46e-01 96.2% 57.3%
5035419 5.1.4.40 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.58 45.0 3.05e-01 83.5% 100.0%
4943675 12.3.1.73 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_31_2nd 0.58 49.0 3.57e-01 93.7% 43.6%
3393937 5.1.4.323 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_WDR75_1st 0.58 48.0 3.23e-01 93.7% 93.3%
3922884 5.1.4.271 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF30361 0.57 44.0 2.86e-01 82.3% 90.3%
4316390 2.1.1.14 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.56 34.0 3.63e-01 91.1% 70.8%
4440185 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.55 34.0 3.41e-01 89.9% 57.6%
3899237 2.1.1.81 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rrp44_S1 0.55 47.0 4.27e-01 96.2% 97.3%
4681109 2004.1.1.73 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.54 33.0 2.42e-01 96.2% 21.8%
5059089 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 44.0 3.06e-01 94.9% 97.3%
3564372 5.1.4.295 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_DCAF12 0.53 42.0 2.71e-01 89.9% 81.6%
4319423 79.1.1.0 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.53 26.0 3.25e-01 74.7% 81.4%
5042551 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 36.0 3.97e-01 96.2% 90.5%
4374595 79.1.1.0 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.51 26.0 2.74e-01 74.7% 50.0%